search for: apstat

...* Copyright (C) 1998 Ross Ihaka * Copyright (C) 2000--2005 The R Development Core Team * based on AS 111 (C) 1977 Royal Statistical Society * and on AS 241 (C) 1988 Royal Statistical Society The routine is in fact an f2c'd version of AS241 from StatLib: http://lib.stat.cmu.edu/apstat/241 and http://lib.stat.cmu.edu/apstat/ It seems odd to me that this is re-licensed under GPL and copyright asserted to be held by R Development Core Team. I expect that if I looked further I could find plenty of other routines with a similar heritage. The StatLib page states, "The Royal...

...like to use one of the AS Algorithms that used to be published in the journal Applied Statistics of the Royal Statistical Society (Series C). FORTRAN code based on these are available on the Statlib website at http://lib.stat.cmu.edu/modules.php?op=modload&name=PostWrap&file=index&page=apstat/ with the disclaimer, *"The Royal Statistical Society holds the copyright to these routines, but has given its permission for their distribution provided that no fee is charged."* * * *Does this make these programs compatible with an open source license like GPL-2 ? More specifically, c...

...clude <vmi.h> + +extern long boot_gdt_table; +extern struct desc_struct idt_table[256]; +extern unsigned char *trampoline_base; + +#ifdef CONFIG_SMP + +#ifdef CONFIG_HOTPLUG_CPU +#define DEFAULT_SEND_IPI (1) +#else +#define DEFAULT_SEND_IPI (0) +#endif + +int no_broadcast=DEFAULT_SEND_IPI; + +APState ap; + +void __init +smpboot_startup_ipi_hook(int phys_apicid, unsigned long start_eip, + unsigned long start_esp) +{ + /* We require phys_acpicid to be the cpu number. */ + if (hypervisor_found) { + /* Default everything to zero. This is fine f...

...clude <vmi.h> + +extern long boot_gdt_table; +extern struct desc_struct idt_table[256]; +extern unsigned char *trampoline_base; + +#ifdef CONFIG_SMP + +#ifdef CONFIG_HOTPLUG_CPU +#define DEFAULT_SEND_IPI (1) +#else +#define DEFAULT_SEND_IPI (0) +#endif + +int no_broadcast=DEFAULT_SEND_IPI; + +APState ap; + +void __init +smpboot_startup_ipi_hook(int phys_apicid, unsigned long start_eip, + unsigned long start_esp) +{ + /* We require phys_acpicid to be the cpu number. */ + if (hypervisor_found) { + /* Default everything to zero. This is fine f...

...VROMCallEntry romCallReserved[3]; // Reserved call slots +} VROMHeader; + +typedef struct VROMCallTable { + VROMCallEntry vromCall[128]; // @ 0x80: ROM calls 4-127 +} VROMCallTable; + +/* State needed to start an application processor in an SMP system. */ +typedef struct APState { + VMI_UINT32 cr0; + VMI_UINT32 cr2; + VMI_UINT32 cr3; + VMI_UINT32 cr4; + + VMI_UINT64 efer; + + VMI_UINT32 eip; + VMI_UINT32 eflags; + VMI_UINT32 eax; + VMI_UINT32 ebx; + VMI_UINT32 ecx; + VMI_UINT32 edx; + VMI_UINT32 esp; + VMI_UINT32 ebp; + VMI_UINT32 esi; + VMI_...

...VROMCallEntry romCallReserved[3]; // Reserved call slots +} VROMHeader; + +typedef struct VROMCallTable { + VROMCallEntry vromCall[128]; // @ 0x80: ROM calls 4-127 +} VROMCallTable; + +/* State needed to start an application processor in an SMP system. */ +typedef struct APState { + VMI_UINT32 cr0; + VMI_UINT32 cr2; + VMI_UINT32 cr3; + VMI_UINT32 cr4; + + VMI_UINT64 efer; + + VMI_UINT32 eip; + VMI_UINT32 eflags; + VMI_UINT32 eax; + VMI_UINT32 ebx; + VMI_UINT32 ecx; + VMI_UINT32 edx; + VMI_UINT32 esp; + VMI_UINT32 ebp; + VMI_UINT32 esi; + VMI_...

...tial state is invalid, or no initial state is provided + before a start IPI is received by that AP, then the AP will fail to start. + It is therefore advisable to have a timeout for waiting for AP's to start, + as is recommended for traditional x86 systems. + + See VMI_SetInitialAPState in Appendix A for a description of the + VMI_SetInitialAPState hypercall and the associated APState data structure. + + State Synchronization In SMP Systems. + + Some in-memory data structures that may require no special synchronization + on a traditional x86 systems need spec...

...tial state is invalid, or no initial state is provided + before a start IPI is received by that AP, then the AP will fail to start. + It is therefore advisable to have a timeout for waiting for AP's to start, + as is recommended for traditional x86 systems. + + See VMI_SetInitialAPState in Appendix A for a description of the + VMI_SetInitialAPState hypercall and the associated APState data structure. + + State Synchronization In SMP Systems. + + Some in-memory data structures that may require no special synchronization + on a traditional x86 systems need spec...

...he AS Algorithms that used to be published in > the journal Applied Statistics of the Royal Statistical Society (Series C). > FORTRAN code based on these are available on the Statlib website at > > http://lib.stat.cmu.edu/modules.php?op=modload&name=PostWrap&file=index&page=apstat/ [snip] > > *BTW I am looking at AS 133 : Finding the global maximum or minimum of a > function of 1 variable. > * >

Hello, I am trying to call a FORTRAN subroutine from R. The Fortran code is @: http://lib.stat.cmu.edu/apstat/206 It performs a bivariate isotonic regression on a rectangular grid (m X n) matrix. I used the g77 compiler and successfully created a dll file and it also loads successfully from R. But somehow the programs fails to run properly. (I do get the correct result when I compile the FORTRAN code). Pl...

...numbers between 0 and 2^k-1. The two-sample case is a bit more unwieldy... > > * I also mentioned some time ago that I'd like to make Fisher's test > available for tables larger than 2 by 2. There is an implementation > (FEXACT) of the Mehta and Patel algorithm available via APSTAT (I > think). However, when I last used it (for an association analysis of a > gene with 12 alleles) it could not deal with the ``large'' 12 by 2 > table. (More precisely, it can deal with it after enlarging some size > parameters in the sources and recompiling, but that's...

Greetings! I want to have the coefficients that R uses in shapiro.test() for the Shapiro-Wilk test for a prticular sample size, i.e. the a[i] in W = Sum(a[i]*x[i])/(Sum(x[i] - mean(x))^2) (where the x[i] are sorted). Two questions: Q1: Is there a readymade R function from which I can extract these? Q2: I was wondering if I might be able to modify the code for the function shapiro.test() so

Dear R developers: There is a possible bug in calculating the p-value for Spearman's rank correlation. Line 155 in file R-patched/src/library/stats/R/cor.test.R is as.double(round(q) + lower.tail), I think, it should be as.double(round(q) + 2*lower.tail), The reason is that round(q) is expected to be an even number (the S statistic), so the next feasible value is round(q)+2.

Maybe this is dumb, but I seem to be having problems reading a file saved in R v. 0.99 into R 0.90.1 (in a different machine). I did >save(test1, file="test1.RData") then I tried to read that data file in R 0.90.1: >load("test1.RData") Error in load("test1.RData") : restore file corrupted -- no data loaded More info: - both machines are running Linux;

..._model#Mapping_RGB_to_CMYK,4,private src/library/grDevices/man/pdf.Rd,https://www.r-project.org/doc/Rnews/Rnews_2006-2.pdf,1,r-project src/library/base/man/taskCallbackNames.Rd,https://developer.r-project.org/TaskHandlers.pdf,3,r-project src/library/stats/man/shapiro.test.Rd,http://lib.stat.cmu.edu/apstat/R94,5,private src/library/tcltk/man/TkWidgets.Rd,http://www.tkdocs.com,2,private src/library/graphics/man/assocplot.Rd,http://www.math.yorku.ca/SCS/sugi/sugi17-paper.html,1,academic src/library/graphics/man/assocplot.Rd,http://epub.wu.ac.at/dyn/openURL?id=oai:epub.wu-wien.ac.at:epub-wu-01_8a1,1,aca...

...nt count); +VMICALL void VMI_ReleasePage(VMI_UINT32 ppn, int flags); +VMICALL int VMI_FlushDeferredCalls(VMI_UINT32 mode); +VMICALL int VMI_TestAndSetPxELongBit(VMI_UINT64 *ptep, int bit); +VMICALL int VMI_TestAndClearPxELongBit(VMI_UINT64 *ptep, int bit); +VMICALL void VMI_SetInitialAPState(VMI_UINT32 apState, + VMI_UINT32 apicId); + +/* Linux name convention shims */ +#define vmi_set_pxe(p,v) VMI_SetPxE((VMI_UINT32 *)(p),v) +#define vmi_set_pxe_long(v,p) VMI_SetPxELong(v, (VMI_UINT64 *)(p)) +#define vmi_set_pxe_long_atomic(v,p) VMI_SetP...

...nt count); +VMICALL void VMI_ReleasePage(VMI_UINT32 ppn, int flags); +VMICALL int VMI_FlushDeferredCalls(VMI_UINT32 mode); +VMICALL int VMI_TestAndSetPxELongBit(VMI_UINT64 *ptep, int bit); +VMICALL int VMI_TestAndClearPxELongBit(VMI_UINT64 *ptep, int bit); +VMICALL void VMI_SetInitialAPState(VMI_UINT32 apState, + VMI_UINT32 apicId); + +/* Linux name convention shims */ +#define vmi_set_pxe(p,v) VMI_SetPxE((VMI_UINT32 *)(p),v) +#define vmi_set_pxe_long(v,p) VMI_SetPxELong(v, (VMI_UINT64 *)(p)) +#define vmi_set_pxe_long_atomic(v,p) VMI_SetP...

...VMICALL void VMI_AllocatePage(VMI_UINT32 ppn, int flags, VMI_UINT32 orig, int base, + int count) +{ +} + +VMICALL void VMI_ReleasePage(VMI_UINT32 ppn, int flags) +{ +} + +VMICALL int VMI_FlushDeferredCalls(VMI_UINT32 mode) +{ + return 0; +} + +VMICALL void VMI_SetInitialAPState(VMI_UINT32 apState, VMI_UINT32 apicId) +{ +} Index: linux-2.6.16-rc5/arch/i386/mach-vmi/stubs-asm.S =================================================================== --- linux-2.6.16-rc5.orig/arch/i386/mach-vmi/stubs-asm.S 2006-03-08 16:53:32.000000000 -0800 +++ linux-2.6.16-rc5/arch/i386/mach-v...

...VMICALL void VMI_AllocatePage(VMI_UINT32 ppn, int flags, VMI_UINT32 orig, int base, + int count) +{ +} + +VMICALL void VMI_ReleasePage(VMI_UINT32 ppn, int flags) +{ +} + +VMICALL int VMI_FlushDeferredCalls(VMI_UINT32 mode) +{ + return 0; +} + +VMICALL void VMI_SetInitialAPState(VMI_UINT32 apState, VMI_UINT32 apicId) +{ +} Index: linux-2.6.16-rc5/arch/i386/mach-vmi/stubs-asm.S =================================================================== --- linux-2.6.16-rc5.orig/arch/i386/mach-vmi/stubs-asm.S 2006-03-08 16:53:32.000000000 -0800 +++ linux-2.6.16-rc5/arch/i386/mach-v...

>>>>> Thomas Levine <_ at thomaslevine.com> >>>>> on Fri, 28 Jul 2017 18:53:16 +0000 writes: > The attached patch corrects a dead link in the treering > documentation. The URL in the manual [1] refers to a > personal home page belonging to Christine Hallman (user > "hallman") on the website of the University of Arizona