search for: anoymous

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2008 Oct 16
1
Rscript -e, Sweave and tempdir()
.... The corresponding code in Sweave is: tmpcon <- file() sink(file=tmpcon) err <- NULL if(options$eval) err <- evalFunc(ce, options) cat("\n") # make sure final line is complete sink() output <- readLines(tmpcon) close(tmpcon) So you need to figure out where file() opens the anoymous temporary file on your operating system. His is the same place as a call to tempdir() shows, e.g. on my Linux box: R> tempdir() [1] "/tmp/RtmpIzi6Yv" so it tries to write under /tmp. _____________________________________________ Paul Rustomji Rivers and Estuaries CSIRO Land and Water...
2008 Jul 08
2
list genes w/n a genomic fragment
Hi, is there any package/function in Bioconductor that can do this: if given the chromosome positions of a fragment, find out all genes within, and with the information about which strand is the sense strand. And vice versa. Thanks a lot. ----- Appreciate your time & attention! -- View this message in context: http://www.nabble.com/list-genes-w-n-a-genomic-fragment-tp18331452p18331452.html