search for: anamaria

Thank you so much David, here is correction: d1=suppressWarnings(read.csv("/Users/anamaria/Downloads/B1.csv", stringsAsFactors=FALSE, header=TRUE)) d1$X <- NULL d2=as.matrix(sapply(d1, as.numeric)) pdf("~/graph.pdf") b<-barplot(d2, legend= c("SYCL", "CUDA"), beside= TRUE,las=2,cex.axis=0.7,cex.names=0.7,ylim=c(0,80), col=c("#9e9ac8", &qu...

Hello, I have a data frame like this: d11=suppressWarnings(read.csv("/Users/anamaria/Downloads/B1.csv", stringsAsFactors=FALSE, header=TRUE)) > d11 X Domain.decomp. DD.com..load Neighbor.search Launch.PP.GPU.ops. Comm..coord. 1 SYCL 2. 1 0 3.7 0. 1 1 .6 2 CUDA 2 0 3. 1...

...0.7", "1 .2", "0. 5", "1 .0", "1 .1"), PIE.solve.Elec = c(0.7, 0.5, 0.6, 0.3, 0.7, 0.5, 0.7, 0.5)), class = "data.frame", row.names = c(NA, -8L)) I am plotting this data with: library(reshape2) library(ggplot2) df <- read.csv("/Users/anamaria/Downloads/B5.csv", stringsAsFactors=FALSE, header=TRUE) df.long<-melt(df,id.vars=c("ID","Type","Annee")) myplot =ggplot(df.long,aes(variable,value,fill=as.factor(Annee)))+ geom_bar(position="dodge",stat="identity")+ ylab("Simula...

Hello, I am trying to find a hessian matrix that involves log(gamma(1/p)) second derivative, p being one of the parameters of the function. I am using a function "deriv" with the hessian=TRUE option, but psigamma is not on the list of derivative functions. I know that it is possible to use 'psigamma(p,deriv)', but it doesn't work with 1/p. Does anybody can help with this?

Hello, I would like some help figuring out how to run Covariable Logistic Regression in R. I've been searching for a while on how to get this done in R (I have had the luck previously of using a software package that just does it) and I am coming up empty handed. Any experience or insights would be greatly appreciated. There is a package that does do exactly what I want, with the exception

...bil.univ-lyon1.fr/software/SeqinR/SEQINR_CRAN/DOC/html/crelistfromclientdata.html o A new function pmw() to compute the molecular weight of a protein is now available. http://pbil.univ-lyon1.fr/software/SeqinR/SEQINR_CRAN/DOC/html/pmw.html o A new function reverse.align() contributed by Anamaria Necsulea is now available to align CDS at the protein level and then reverse translate this at the nucleic acid level from a clustalw output. This can be done on the fly if clustalw is available on your platform. http://pbil.univ-lyon1.fr/software/SeqinR/SEQINR_CRAN/DOC/html/reverse.align...

...bil.univ-lyon1.fr/software/SeqinR/SEQINR_CRAN/DOC/html/crelistfromclientdata.html o A new function pmw() to compute the molecular weight of a protein is now available. http://pbil.univ-lyon1.fr/software/SeqinR/SEQINR_CRAN/DOC/html/pmw.html o A new function reverse.align() contributed by Anamaria Necsulea is now available to align CDS at the protein level and then reverse translate this at the nucleic acid level from a clustalw output. This can be done on the fly if clustalw is available on your platform. http://pbil.univ-lyon1.fr/software/SeqinR/SEQINR_CRAN/DOC/html/reverse.align...

...esigned for eukaryotic sequences, i.e. with introns. The output file will contain the coordinates of the exons, along with the name of the CDS to which they belong. o After an e-mail by Marcelo Bertalan on 26 Mar 2007, a bug in oriloc() when the gbk argument was NULL was found and fixed by Anamaria Necsulea. o Functions translate() and getTrans() have gained a new argument NAstring to represent untranslatable amino-acids, defaulting to character "X". o There was a typo for the total number of printed bases in the ACNUC books: 474,439 should be 526,506. o Function invers() h...

...esigned for eukaryotic sequences, i.e. with introns. The output file will contain the coordinates of the exons, along with the name of the CDS to which they belong. o After an e-mail by Marcelo Bertalan on 26 Mar 2007, a bug in oriloc() when the gbk argument was NULL was found and fixed by Anamaria Necsulea. o Functions translate() and getTrans() have gained a new argument NAstring to represent untranslatable amino-acids, defaulting to character "X". o There was a typo for the total number of printed bases in the ACNUC books: 474,439 should be 526,506. o Function invers() h...

I have code like this: data <- read.csv("test1.csv", stringsAsFactors=FALSE, header=TRUE) # Graph myplot=ggplot(data, aes(fill=condition, y=value, x=condition)) + geom_bar(position="dodge", stat="identity", width=0.5) + scale_fill_manual(values=c("#7b3294", "#c2a5cf", "#a6dba0", "#008837"))+

Hello. My name is Ana. I?m doing an eology master, and I?m just learning how R works. I have a Mac OS X 10.5.6, and I?m tryng to run just a simple ANOVA nanalyses. I dowloaded R version 2.10.0, and it seems I have problems with the script. I don?t know what to do, I?ve already change the languages, be sure of being working in the correct directory and doesn?t work the script is: #1. example

Hello I am currently studying spatial distribution of lizards in Spain and Germany. For this I am using the spatstat package of R to make a Kolmogorov-Smirnov test of CSR of unmarked points data. I have problems transforming the data to ppp class, and I would like to know if you can help me. I have already made the test with the data of 'japanesepines' that comes with the package, and