search for: amelie

...L analysis using the lmer() function (lme4 package). Well, it seems to work well, except that I’m not getting any p-value (see example below). Can someone tell me what I did wrong? Thanks for your help, Amélie > library(gdata) > dive <- read.xls("C:/Documents and Settings/Amelie/My Documents/Postdoc/CE 2005-2006/divebydive.xls", perl="C:/perl/bin/perl.exe") > library(lme4) Loading required package: Matrix Loading required package: lattice > reml.res <- lmer(UNDS~SUCCESSMN+(1|BIRD), dive) > summary(reml.res) Linear mixed-effects model fit by...

...ot;\\U\\1", entry, perl = TRUE) [1] "A" R> gsub("(\\w)", "\\1", entry, perl = TRUE) [1] "author: Am?lie" # OK, but very different to 'A', despite only not specifying uppercase R> gsub("(\\w)", "\\U\\1", "author: Amelie", perl = TRUE) [1] "AUTHOR: AMELIE" # OK, but very different to 'A', R> gsub("^(\\w+?): (\\w)", "\\U\\1\\E: \\2", entry, perl = TRUE) "AUTHOR" # Where did everything after the first group go? I should note the following example too: R>...

...t find function "GLMM" I remember having used lme4 before, without any problem. Can someone help me understanding what is wrong? I'm using R 2.2.1, could that be a problem? I also tried installing lme4 again, and updating the package, with no success. Thanks for your help, Amelie [[alternative HTML version deleted]]

Hello, Could someone explain to me why I get so different histograms, in terms of bar spacing, depending on the number of counts entered ? (see example below) > test <- c(0,1,1,1,1,0,0,0,0,0,2,3,2,2,2,3,3,4,5,6,7,5,4,3,4,2,2) > hist(test) I obtain this kind of histogram (what I actually want), i.e. large bars with no space between them x xx xxx xxxx xxxxx xxxxxx

...ENSGzzzz, I am trying to keep only the first part: ENSGxxxx. I wasn't able to find any helpful information about how to do it. Could you help me with that please ? Is the use of the equivalent to the Excel * (any text) a good way of doing it and how ? Your help will be very much appreciated. Amelie [[alternative HTML version deleted]]

...first sub-elements ($desc) of my list in order to be able to test for the presence of some elements using their desc (description). Something like lapply(mylist, fun='$desc') doesn't work. For loops could do but are they the best thing I can do ? Thanks a lot for your help ! Amelie -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a compa ny registered in England with number 2742969, whose registered office is 2 15 Euston Road, London, NW1 2BE. [[alternative HTML version del...

...UE) > [1] "A" > > R> gsub("(\\w)", "\\1", entry, perl = TRUE) > [1] "author: Am?lie" # OK, but very different to 'A', despite only > not specifying uppercase > > R> gsub("(\\w)", "\\U\\1", "author: Amelie", perl = TRUE) > [1] "AUTHOR: AMELIE" # OK, but very different to 'A', > > R> gsub("^(\\w+?): (\\w)", "\\U\\1\\E: \\2", entry, perl = TRUE) > "AUTHOR" # Where did everything after the first group go? > > I should note the...

I was told to re-raise this issue with R-dev: In the documentation of R-dev and R-3.4.3, under ?gsub > replacement > ... For perl = TRUE only, it can also contain "\U" or "\L" to convert the rest of the replacement to upper or lower case and "\E" to end case conversion. However, the following code runs differently: tempf <- tempfile()

...uot;tmv3", the merging is fine, but all the rows get duplicated: > tmv3 <- merge(tmv, meil2, sort=TRUE, by=c("sexe", "dist", "style") ) > tmv3[1:10,] sexe dist style temps nom prenom meil 1 F 38 clas 02:49:15 Boucher Marie-Amelie 02:43:17 2 F 38 clas 02:49:15 Boucher Marie-Amelie 02:43:17 3 F 38 clas 03:24:05 Vachon Guylaine 02:43:17 4 F 38 clas 03:24:05 Vachon Guylaine 02:43:17 5 F 38 clas 03:13:11 Villeneuve Rejean 02:43:17 6 F 38 clas 03:13:11 Villeneuve R...

Hi folks, I'm a Linux user from Germany (more details about me at ameliezapf.com) and use Wine to run Origin 6.1 (the scientific graphics program). That seems to all go fine, and indeed it did when I used the Wine included in SuSE 9.0 (Wine20030813). Now I've upgraded to SuSE 9.2 (Wine 20040813) and suddenly, the paper sizes do not get handed through to Origin...

Dear all, I am trying to model variation of distribution of species assemblages according to environmental variables. For that I use a log linear multinomial regression. In order to select variables that mostly discriminate the assemblages, I tried to apply a hierarchical partitioning protocol to my data set. For that I have adapted the all.regs() for multinomial model. The problem is that I

...imes the same row (28). So, this is still a black box for me. Even if as it is mentionned in the help page of mda(), "the 'weights' argument need never be accessed", do you think it's possible to avoid this duplicated sampling? Thanks in advance for your ideas, Amelie Vaniscotte University of Franche-comt? 25000 Besan?on

Hello Amelie, I don't have an answer to your question, but I just wanted to point out this page I noticed recently ( http://hlplab.wordpress.com/2009/05/07/multinomial-random-effects-models-in-r/), which might be helpful. I'm also interested in figuring out how to do a multinomial glmm, so if you find...

Hello, I’m trying to fit the following model: Dependent variable: MAXDEPTH (the maximum depth reached by a penguin during a given dive) Fixed effects: SUCCESSMN (an index of the “individual quality” of a bird), STUDYDAY (the day of the study, from -5 to 20, with 0=Dec 20), and the interaction SUCCESSMN*STUDYDAY Random effect: BIRD (the bird id, as each bird is performing several dives)

Hi, I am running a mixed-effect model with a nested-random effect. I am interested in gut parasites in moose. I has three different type of treatment that I applied to moose which are from different "families". My response variable is gut parasites and the factors are moose families which is nested within treatment. My data is balanced. To answer this question, I used the lme function

...presses in shellview don't select files if there is only one file present 18385 fr-041_debris Postprocessing offset and too big 19082 Missing pixels in the widgets 19462 d3d9: visual test crashes with glsl disabled with nvidia 190 drivers 19637 FEAR: Crashes on launch 19720 Game (Amelie's Cafe) cannot be starten 20157 Vector Magic doesn't render texts 20261 Call to unimplemented function d3dx9_36.dll.D3DXCheckTextureRequirements 20700 ACDSee crashing when trying to edit file names in Listview 20703 ACDSee crashing after creating new folder 20735 Photoshop El...

hello, we are french student, we have problem for export the test on Excel. we didn't succed for save and name the test so we can't export it... can you help us please thanks _________________________________________________________________ mobile comme sur PC ! http://mobile.live.fr/messenger/bouygues/

Hello, I discovered SAGA, an interesting free GIS, a few days ago and now, I would like to use it from within R 2.6.2 using the RSAGA package. I read the documentation for this package and thought that I understood it correctly for trying to call some of the SAGA modules. For getting the information on the usage of and arguments required by the SAGA command line "Import Binary Raw