Displaying 1 result from an estimated 1 matches for "alwaysuserandomperm".
2010 May 20
1
computer out of memory when using sigpathway
...statList <- calcTStatFast(Y,p,ngroups=2)
hist(statList$pval,breaks=seq(0,1,0.025),xlab="p-value",ylab="Frequency",main="")
set.seed(1234)
YANG <- runSigPathway(yy,20,500,Y,p,nsim=100,weightType="constant",ngroup=2,npath=10,verbose=F,allpathway=F,alwaysUseRandomPerm=F)
#write.table(YANG$df.pathways[1:25, ])
write.table(YANG$df.pathways[1:25,],quote=F,sep="\t",file="chr1_sig.txt")
YANG$list.gPS[[1]]
save.image("chr1_sig")