search for: align1

Hello all: I have a protein sequence alignment in a data frame (align1, 72 x 236), where each row is a protein and each column a site in the alignment. AA is vector of amino acid symbols plus "-" (gap). I can calculate amino acid frequencies at each site by: >align1.F <- matrix(0,nrow=22,ncol=236,dimnames=list(AA,seq(1:236))) >for(i in 1:236) >...

...pyright (C) 1995-1999 Free Software Foundation, Inc. + * Copyright (C) 2001 Manuel Novoa III + * Copyright (C) 2003 Glenn L. McGrath + * Copyright (C) 2003 Erik Andersen + * Copyright (C) 2010 Denys Vlasenko + * Copyright (C) 2012 Pascal Bellard + * + * Licensed under GPLv2 or later + */ + +#define ALIGN1 + +/* Emit a string of hex representation of bytes */ +static char* bin2hex(char *p, int count, const void *in) +{ + static const char bb_hexdigits_upcase[] ALIGN1 = "0123456789abcdef"; + const char *cp = (const char *) in; + while (count) { + unsigned char c = *cp++; + /* put lowercase...

Hello, Persuant to feedback, http://lists.cs.uiuc.edu/pipermail/llvmdev/2012-August/052927.html here is a new proposal for detailed struct assignment information. Here's the example showing the basic problem: struct bar { char x; float y; double z; }; void copy_bar(struct bar *a, struct bar *b) { *a = *b; } The solution I now propose here is to have front-ends describe the copy using