search for: akrc

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2004 Dec 20
2
problems with limma
...80.46641 3.346749e-05 -4.521041 11773 1784.483 73.76620 3.346749e-05 -4.521053 > # Now lets do all together in Anova > # > all <- cbind(nzw,akr) > ts <- c(1,1,1,2,2,2,3,3,3,4,4,4) > ts <- as.factor(ts) > levels(ts) <- c("nzwC","nzwT","akrC","akrT") > design <- model.matrix(~0+ts) > colnames(design) <- levels(ts) > fit4 <- lmFit(all,design) > cont.matrix <- makeContrasts( + Baseline = akrC - nzwC, + NZW_Smk = nzwT - nzwC, + AKR_Smk = akrT - akrC, + Diff = (akrT - akrC) - (...
2004 Dec 21
0
Fwd: problems with limma
...1041 > 11773 1784.483 73.76620 3.346749e-05 -4.521053 >> # Now lets do all together in Anova >> # >> all <- cbind(nzw,akr) >> ts <- c(1,1,1,2,2,2,3,3,3,4,4,4) >> ts <- as.factor(ts) >> levels(ts) <- c("nzwC","nzwT","akrC","akrT") >> design <- model.matrix(~0+ts) >> colnames(design) <- levels(ts) >> fit4 <- lmFit(all,design) >> cont.matrix <- makeContrasts( > + Baseline = akrC - nzwC, > + NZW_Smk = nzwT - nzwC, > + AKR_Smk = akrT - akrC,...