Displaying 3 results from an estimated 3 matches for "affymetrixcelset".
2010 Sep 07
1
Dispatch method on S3 or S4 class
...which can be either an S3 or an S4 class. This is as far as I've gotten. Any suggestions about what to try next ?
library(aroma.affymetrix)
library(GenomicRanges)
setGeneric("analyse", function(x, y, ...) standardGeneric("analyse"))
setMethodS3("analyse", "AffymetrixCelSet", function(x, y, z, ...)
{
x;
UseMethod("analyse")
}
)
setGeneric("analyse")
setMethod("analyse", "GRangesList", function(x, y, a, b, c)
{
x;
}
)
Thanks,
Dario.
--------------------------------------
Dario Strbenac
Research Assistant
Cancer...
2011 Apr 06
2
R CMD check for 2.13 rc
...ct normalizePath is not exported by 'namespace:utils'
./Repitools.Rcheck/tests/tests.Rout.fail:Error : object 'normlizePath' is not exported by 'namespace:utils'
I haven't got a clue where to look next.
My second concern is that I have used the code:
setOldClass("AffymetrixCelSet")
to make an S3 class be S4 dispatchable on. But R 2.13 wants me to document this class that I don't own:
* checking for missing documentation entries ... WARNING
Undocumented S4 classes:
AffymetrixCelSet
Is this truly necessary ?
--------------------------------------
Dario Strbenac...
2011 Apr 20
2
Package Name Not Found Warning
Hello,
I've got a DESCRIPTION file with a the first line:
Package: Repitools
But, when I run R CMD INSTALL Repitools I get:
* installing *source* package Repitools ...
** R
** data
** inst
** preparing package for lazy loading
Warning in FUN(X[[1L]], ...) :
Created a package name, "2011-04-20 09:05:40", when none found
** help
*** installing help indices
** building package