search for: affylmgui

Hi, I am trying to run affylmGUI on my mac computer. I have already installed the Tlc package as well as Bwidgets through ActiveTcl conversion installing files. However, when running affylmGUI() on R, I keep getting the message in the attached file. I have copied the tcl folders from the root library to the user library,...

Hi everyone. I installed affylmGUI and oneChannelGUI package on R 2.7.1 with the latest version of BioC. After I start R, I do get an error that says "Error in loadNamespace(name) : there is no package called 'affylmGUI'" and a pop-up window with a message "fatal error : unable to restore saved data in .Rdata...

I maintain the package affylmGUI. It works when installed on many previous versions of R. I have today tested exactly the same code under R-2.15.3, R-3.0.2, R-3.1.0, R-3.1.1, R-3.1.2 and R-devel. I have also tested the versions of affylmGUI downloaded by biocLite for each version of R and the same result applies. I have no er...

...of tclVar, wrapping each line in Try() for no apparent reason (or?), with the apparent purpose of doing something that seems quite similar to what tclArray() already does...) -pd > On 14 Jan 2015, at 06:50 , Keith Satterley <keith at wehi.edu.au> wrote: > > I maintain the package affylmGUI. It works when installed on many previous versions of R. I have today tested exactly the same code under R-2.15.3, R-3.0.2, R-3.1.0, R-3.1.1, R-3.1.2 and R-devel. > > I have also tested the versions of affylmGUI downloaded by biocLite for each version of R and the same result applies. >...

...arCount <- TclVarCount + 1, .TkRoot$env)) with Try(n <- .TkRoot$env$TclVarCount <- .TkRoot$env$TclVarCount +1L) as you suggest. It now works for both R-3.1.1 and R-3.1.2+ (My understanding is that the Try function is there to put a GUI box around the error messages.) I shall update affylmGUI versions accordingly soon. cheers Keith PS> I have also changed the Depends in DESCRIPTION to Imports and added an import statement to the NAMESPACE file which is independent of this problem. Consequently removed Require("tkrplot") statements as no longer needed. ----- peter dalgaard...

I have been trying to use the package affylmGUI but keep getting the error message that it cannot find the package "Bwidget". I have downloaded the activeTcl for Windows and installed it in the default location C:\Tcl. The problem still persists. I have also tried to copy the files from C:\Tcl\lib into the C:\Arquivos de programas\R\R-...

Hi, Can anyone help me of the affylmGUI package, I can't get it work and searched for google but can't find any proper solutions. I get the error information each time when I load my cells files, which are shown in the following links. ------------- http://clarezoe.googlepages.com/1.png http://clarezoe.googlepages.com/2.png http...

...just wondering approximately how many people use / have used some of the R stuff I've developed (and in how many countries). In particular I'm talking about the R-Tcl/Tk examples I've put at http://bioinf.wehi.edu.au/~wettenhall/RTclTkExamples/ and/or my two BioC packages limmaGUI and affylmGUI (now maintained by Keith Satterley), and/or the IBC2004 and JSM2005 microarray analysis course websites. If it's not too much trouble, could you please tell me [OFF THE LIST] if you use / have used any of these things (otherwise don't reply) and what country you are from, and if there are...

...rom http://www.activestate.com/Products/ActiveTcl/ (by following the link at the right side of the page, and installing activeTCL8.5.0.0) Nonetheless, when I try running the oneChannelGUI I get an error message starting off like this: Cannot find Tcl/Tk package "BWidget". affylmGUI cannot continue. affylmGUI requires the Tcl/Tk extensions, BWidget and Tktable. You must have Tcl/Tk installed on your computer, not just the minimal Tcl/Tk installation which comes with R (for Windows). If you do have Tcl/Tk installed, including the extensions (e.g. using the...

I am the maintainer of a Bioconductor package (affylmGUI) which uses tcltk. It freezes inconsistently on MS Windows, but not Mac or Unix. see details below. After considerable testing I have reduced the problem from a few thousand lines of code to 30 lines! If you paste the following lines of code into an R window: testGUI <- function(){ r...

...ning properly on Ubuntu 11.10 as I have tried everything it seems like and I keep on getting this message. But before I go farther can you please email and say that you will help me with this because nobody seems to want to help or know how to. "Cannot find Tcl/Tk package "Tktable". affylmGUI cannot conitnue...." I have installed BWidget like it tells me to. I have tried to install Tktable 2.9 but cannot. When I try to do so I cannot run the make file properly. Then I have ran ./configure > output and gotten /Tktable2.9$ ./configure > output > configure: WARNING: "...

...please send error report' box pops up). Instead, it has something to do with the order & type of packages that are loaded that add items to the menu bar by themselves, or adding more options under 'Vignettes'. Specific combinations of any 3 of: affycoretools, RWinEdt, affyPLM or affylmGUI can cause the crash. So far, I haven't been able to get it to crash without affycoretools, even if I load all the dependencies by themselves, but that may just be because I don't know of another package that adds to the menu bar. After playing around with this for a while, even combina...

...== -- Proteomics (PROcess, gpls, apComplex) -- Array CGH (DNAcopy, aCGH) -- Cell cycle analysis (GeneTS) -- Packages for lab assay analysis and management (prada) -- Agilent arrays handling in limma -- Annotation tools (Resourcer, GOstat, goTools, ontoTools) -- Improved interfaces (limmaGUI, affylmGUI, webbioc, -- MAGE file processing (RMAGEML) -- affymetrix processing: many improvements, gcrma, affypdnn (probe-dependent nearest neighbors), affyPLM (probe-level models). -- marray (next generation of the depreciated marrayClasses, marrayNorm, marrayPlots, marrayTools packages) -- Gen...

Hello, Following a discussion initiated on r-devel, that mentions SciViews-R and other GUIs issues for R, I would like to make comments (and would be happy if these comments would initiate interesting initiatives). A big, big problem with SciViews-R is that a part of it is written in Visual Basic 6, a M$$$$ language, not supported any more, buggy, non transposable to other platforms, etc,