search for: affycomp

Hi How do I install "gregmisc" packages? I did- % sudo R > install.packages("gregmisc") . . > barplot2() but, Error: couldn't find function "barplot2" -- atuya Mac OSX 10.2.6 R 1.7.1

...eprecated express function has been completely removed. Lastly, most normalization routines for AffyBatches can now be called with the parameter type which specifies whether the normalization should be applied as a PM-only, MM-only, both PM and MM together or PM and MM separately. --- affycomp: New assessment was added: assessSpikeIn2. Examples of new feature: Local slopes are computes and ROC curves divided by overall expression. Also, all functions that work for hgu95a spike in now also work for hgu133a spike in experiment --- annaffy: Functions for handling data fro...

...eprecated express function has been completely removed. Lastly, most normalization routines for AffyBatches can now be called with the parameter type which specifies whether the normalization should be applied as a PM-only, MM-only, both PM and MM together or PM and MM separately. --- affycomp: New assessment was added: assessSpikeIn2. Examples of new feature: Local slopes are computes and ROC curves divided by overall expression. Also, all functions that work for hgu95a spike in now also work for hgu133a spike in experiment --- annaffy: Functions for handling data fro...

...s' problem when they do not have enough memory for working with the full method. The package's implementation of MAS 5.0 now agrees better with Affymetrix's then in previous releases, and now includes a function mas5() to make it easier for a user to obtain these results. * affycomp: A new package that serves as a graphics toolbox for the assessment of Affymetrix expression measures. * AnnBuilder: DB support is no longer required. ABPkgBuilder now provides a signle API for building of data packages. Also, data packages built with AnnBuilder will include an evidence...

...ing command? Thanks, Corinna Here is the result of the command library(): Pakete in Library 'D:/R/R-2.6.0/library': ada Performs boosting algorithms for a binary response affy Methods for Affymetrix Oligonucleotide Arrays affycomp Graphics Toolbox for Assessment of Affymetrix Expression Measures affydata Affymetrix Data for Demonstration Purpose affyio Tools for parsing Affymetrix data files affyPLM Methods for fitting probe-level models a...

I have recently upgraded to Ubuntu Gutsy and, for the first time, am using a 64-bit installation. After failing miserably to install R from source, not a problem for me in the past with a 32-bit install, I went the route of using the Debian Etch build. This went smoothly, but I am unable to update my numerous R and BioConductor packages, getting non-zero exit status errors on each package. Is