search for: affxparser

...file names for src files. In fact, they are not source files, but I do not see any reason why they cannot be there, or why I need to be warned of their presence. Potentially I could be informed of their presence, but that is another matter. Now, I only get this warning when I do: R CMD build affxparser R CMD check -l ~/R-packages/ affxparser_1.3.3.tar.gz If I do: R CMD check -l ~/R-packages affxparser I do not get the warning. Is this inconsistent, or is there rationale behind this? I think the warning is inappropriate, or at the least a little restrictive. It seems as if I should be able to...

For what it's worth, with R --no-init-file CMD check --as-cran ${pkg}_${version}.tar.gz on R version 2.15.0 alpha (2012-03-03 r58572) on Windows I just managed to generate a crash: Checking package affxparser... * using log directory 'X:/affxparser,BioC-devel/R2.15.0/affxparser.Rcheck' * using R version 2.15.0 alpha (2012-03-03 r58572) * using platform: x86_64-pc-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'affxparser/DESCRIPTION' ... OK * this is package '...

Dear R-devel, I am writing a package that needs some C++ functions from an external SDK (Affymetrix fusion). The same functions are already compiled into another package (affxparser). Can I dynamically link to the compiled code in affxparser, rather than re-compiling these separately into my package? Not a lot of experience on this subject! Thanks, Charles

...unction (env) : could not find function "finalize" Error in function (env) : could not find function "finalize" Error in function (env) : could not find function "finalize" The error occurs in R CMD check but also when start a fresh R session and run, in this case, affxparser.Rcheck/affxparser-Ex.R. It always occur on the same line. When I debug(sample), all values passed to the internal function looks fine. I've replaced it with runif() and vector("double", nbrOfCells) and manged to get the error there too. So, it seems like there are some memory issu...

Hi, for 'affxparser' (Bioconductor), we needed a function to test if a certain package was loaded or not, but we did not want to load it if it wasn't, which is why we couldn't use require(). We came up with the following solution: isPackageLoaded <- function(package, version=NULL, ...) { s <-...

...should open 'http://127.0.0.1:6850/doc/html/index.html' yourself with http://127.0.0.1:6850/doc/html/packages.html displaying: Packages in C:\Users\JohnDoe\R\win-library\2.10 C:\Users\JohnDoe/R/win-library/2.10/abind/DESCRIPTION -- Title is missing -- C:\Users\JohnDoe/R/win-library/2.10/affxparser/DESCRIPTION -- Title is missing -- C:\Users\JohnDoe/R/win-library/2.10/affy/DESCRIPTION -- Title is missing -- where the abind link is http://127.0.0.1:6850/library/C:%5CUsers%JohnDoe/R/win-library/2.10/abind/DESCRIPTION/html/00Index.html and similarly for affxparser and so on. This third case ma...

I have identical R.profiles and R_HOME directories set up on both my local machine and a remote linux cluster. To keep my libraries and R install separate, I use a site-library on both machines. The first line of my .Rprofile is: '.libPaths(new= "~/R_HOME/site-library") #tell R where site-library is' Until R-2.6.0 this was working fine on both machines, but since I have been

Hi, Today we've seen the following problem with the R-2.12 that we use for our Windows builds: > installed.packages() Error: subscript out of bounds After some investigation we discovered that the cause of this failure was that 1 of the 890 packages currently installed on the machine (Windows Server 2003 R2) had its DESCRIPTION file empty:

...''openVignette()''. To cite Bioconductor, see ''citation("Biobase")'' and for packages ''citation(pkgname)''. > library(pdInfoBuilder) Loading required package: RSQLite Loading required package: DBI Loading required package: affxparser Loading required package: oligo Loading required package: splines Loading required package: preprocessCore Loading required package: AnnotationDbi Loading required package: oligoClasses oligo Package - Series 1.5.x > setwd("D:/Anne-Marie/Doctorat/puces ADN macrophages/puces rat/Annie...

I have recently upgraded to Ubuntu Gutsy and, for the first time, am using a 64-bit installation. After failing miserably to install R from source, not a problem for me in the past with a 32-bit install, I went the route of using the Debian Etch build. This went smoothly, but I am unable to update my numerous R and BioConductor packages, getting non-zero exit status errors on each package. Is