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2dguide
2012 Oct 18
1
WGCNA: Combining block-wise dendrograms and modules into a single figure
...eral methods for compiling the separate dendrograms together
for the complete figure:
Input:
plotDendroAndColors(bwnet$dendrograms[[1:10]],
bwModuleColors[bwnet$blockGenes[[1:10]]],
"Module colors",
dendroLabels = FALSE, hang = 0.03,
addGuide = TRUE, guideHang = 0.05)
# Above, 'bwnew$dendrograms[[x]]' is equivalent to the parameter specified
by 'geneTree', but must be changed each time to plot blocks 1-10
# In addition, bwModuleColors[bwnet$blockGenes[[x]]] should be changed with
the parameters for the geneTree equivale...
2010 Aug 06
1
Grouping clusters from dendrograms
...average")
> cut2<-cutreeDynamicTree(dendro,maxTreeHeight=1,deepSplit=TRUE,minModuleSize=1)
I then used the following to visualise the data:
> cut2colour<-labels2colors(cut2)
> plotDendroAndColors(dendro,cut2colour,"Dynamic Tree Cut",
> dendroLabels=FALSE,hang=0.03,addGuide=TRUE,guideHang=0.05)
Any advice or ideas would be much appreciated!
Thanks,
Julia
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