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adagene
2010 Aug 23
3
DNA sequence Fst
Hi,
I want to analyse DNA sequence data (mtDNA) in R as in calculate Fst,
Heterozygosity and such summary statistics. Package Adagenet converts the
DNA sequence into retaining only retaining the polymorphic sites and then
calcuates Fst.. but is there any other way to do this? I mean analyse the
DNA sequence as it is.. and calculate the statistics?
Thanks!
[[alternative HTML version deleted]]
2010 Aug 24
0
mlm for within subject design
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--Forwarded Message Attachment--
From: bluejay948 at gmail.com
To: r-help at r-project.org
Date: Mon, 23 Aug 2010 12:30:28 +0200
Subject: [R] DNA sequence Fst
Hi,
I want to analyse DNA sequence data (mtDNA) in R as in calculate Fst,
Heterozygosity and such summary statistics. Package Adagenet converts the
DNA sequence into retaining only retaining the polymorphic sites and then
calcuates Fst.. but is there any other way to do this? I mean analyse the
DNA sequence as it is.. and calculate the statistics?
Thanks!
[[alternative HTML version deleted]]
--Forwarded Message Atta...