search for: actinobacteria

I have managed to create a data frame like this: > tsus_same_mean[1:10,] PID Grp Dist PercAln PercId 1 12638 Acidobacteria 0.000000000 1.0000000 1.0000000 2 87 Actinobacteria 0.000000000 0.9700000 0.9700000 3 92 Actinobacteria 0.008902000 1.0000000 0.9910000 4 94 Actinobacteria 0.000000000 1.0000000 1.0000000 5 189 Actinobacteria 0.005876733 0.9733333 0.9676667 6 242 Actinobacteria 0.001734200 0.9733333 0.9715333 7 305 Actinobacteria 0.000000000 0.97000...

Hello, How can I create a symmetric contingency table from two categorical vectors having different length of levels? For example one vector has 98 levels TotalData1$Taxa.1 [1] "Aconoidasida" "Actinobacteria (class)" "Actinopterygii" "Alphaproteobacteria" [5] "Amoebozoa" "Amphibia" "Anthozoa" "Aquificae (class)" and so on ......... 98 Levels: Aconoidasida Actinobacteria (cl...

I am very new to R and don't have any computer program experience whatsoever. I am trying to generate a heatmap of the following data: Phylum,AI,AJT,BY,GA,Grt,Sm Acidobacteria,0.5,0.7,2.7,0.1,2.6,1.0 Actinobacteria,33.7,65.1,9.7,2.0,3.9,2.1 Bacteroidetes,9.7,5.6,0.7,13.2,41.1,21.6 CCM11b,0.0,0.0,0.0,0.0,0.0,0.1 Chlamydiae,0.1,0.1,0.0,0.0,1.0,0.2 Chlorobi,0.0,0.0,0.0,0.0,0.7,1.0 Chloroflexi,0.1,0.2,0.6,0.2,0.8,0.6 Cyanobacteria,18.7,0.0,1.0,1.5,0.9,0.3 Ellusimicrobiales,0.0,0.0,0.0,0.0,0.0,0.0 Firmicut...

...OP8 NC10 NKB19 TM7 WS3 Gemmatimonadetes Lentisphaerae GN02 Armatimonadetes Tenericutes Spirochaetes Epsilonproteobacteria TM6 Acidobacteria Chlorobi Firmicutes Nitrospirae Chloroflexi Verrucomicrobia Alphaproteobacteria Betaproteobacteria Deltaproteobacteria Gammaproteobacteria uncl.Proteobacteria Actinobacteria Bacteroidetes Cyanobacteria Planctomycetes unclassified Gi10Sep12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.002583979 0 0.004306632 0 0 0 0 0 0.001722653 0.000861326 0.004306632 0.006890612 0 0 0.003445306 0.005167959 0.192075797 0.074074074 0.011197244 0.029285099 0.01205857 0.312661...