search for: acidobacteria

...inobacteria (class) .... and the other vector has 105 levels TotalData1$Taxa.2 [1] Flavobacteria Proteobacteria Bacteroidetes/Chlorobi group Bacteria [5] Epsilonproteobacteria Epsilonproteobacteria Epsilonproteobacteria and so on .......... 105 Levels: Acidobacteria Aconoidasida Actinobacteria (class) .... Now I want to create a symmetric contingency table. Any quick idea will be really helpful. Best regards, Mitra [[alternative HTML version deleted]]

I have managed to create a data frame like this: > tsus_same_mean[1:10,] PID Grp Dist PercAln PercId 1 12638 Acidobacteria 0.000000000 1.0000000 1.0000000 2 87 Actinobacteria 0.000000000 0.9700000 0.9700000 3 92 Actinobacteria 0.008902000 1.0000000 0.9910000 4 94 Actinobacteria 0.000000000 1.0000000 1.0000000 5 189 Actinobacteria 0.005876733 0.9733333 0.9676667 6 242 Actinobacteria 0.001734200 0.97333...

I am very new to R and don't have any computer program experience whatsoever. I am trying to generate a heatmap of the following data: Phylum,AI,AJT,BY,GA,Grt,Sm Acidobacteria,0.5,0.7,2.7,0.1,2.6,1.0 Actinobacteria,33.7,65.1,9.7,2.0,3.9,2.1 Bacteroidetes,9.7,5.6,0.7,13.2,41.1,21.6 CCM11b,0.0,0.0,0.0,0.0,0.0,0.1 Chlamydiae,0.1,0.1,0.0,0.0,1.0,0.2 Chlorobi,0.0,0.0,0.0,0.0,0.7,1.0 Chloroflexi,0.1,0.2,0.6,0.2,0.8,0.6 Cyanobacteria,18.7,0.0,1.0,1.5,0.9,0.3 Ellusimicro...

...ows. N Chlamydiae Deferribacteres GN12 Hyd24-12 KSB1 PAUC34f SC4 SPAM Thermi WPS-2 ZB3 AD3 Elusimicrobia GAL15 ABY1_OD1 OP9 Fusobacteria HDBW-WB69 OP11 WS1 SR1 ZB2 AC1 OP3 OP8 NC10 NKB19 TM7 WS3 Gemmatimonadetes Lentisphaerae GN02 Armatimonadetes Tenericutes Spirochaetes Epsilonproteobacteria TM6 Acidobacteria Chlorobi Firmicutes Nitrospirae Chloroflexi Verrucomicrobia Alphaproteobacteria Betaproteobacteria Deltaproteobacteria Gammaproteobacteria uncl.Proteobacteria Actinobacteria Bacteroidetes Cyanobacteria Planctomycetes unclassified Gi10Sep12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.002...