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2005 Nov 11
0
Fwd: Re: conditional coloring of image labels
---------- Forwarded Message ----------
Subject: Re: [R] conditional coloring of image labels
Date: Friday 11 November 2005 1:04 pm
From: jim holtman <jholtman at gmail.com>
To: Jake Michaelson <jjmichael at cc.usu.edu>
Use 'mtext':
genes=cbind(ABC1=c(3,4,4,5,6,3), ABC2=c(4,3,4,7,7,8), ABC3=c(8,7,8,6,3,2))
###plot the image
image(1:nrow(genes), 1:ncol(genes), genes, axes = FALSE, xlab = "", ylab =
"", col=cm.colors(256))
sig=cbind(name=c("ABC1", "ABC2", "ABC3"), pvalue=c(0.005, 0.1, 0.001))
#...
2007 Oct 25
2
Find duplicates and save their max value
Hi,
maybe someone can help me with this:
I have a matrix of genes and values:
GeneName Value
Abc1 10
Abc2 11
Bbc1 -5
Bbc31 2
Ccd 5
Ccd -2
Ccd 7
Dda 5
Dda 10
..... .....
Zzz3 -1
I would like to creat...
2008 Dec 16
1
renaming factor-labels / add factors etc.
Hi,
how can I change a defined factor-variable?
Like adding levels, renaming existing levels or merge several levels
of a factor to one level?
For example; following factor-variable is given:
x <- factor(c("xyz1", "abc1", "xyz2", "abc2"))
How can I add the level fgh?
And how can I merge "xyz1" and "xyz2" to one level?
And how can I change the name?
Thanks for any help!
2005 Nov 11
1
conditional coloring of image labels
Hi all,
I am interested in plotting a heatmap of a set of genes. I would like the
text labels of these genes to be colored red rather than black if they meet
certain statistical criteria (using an if statement). I'm not sure how to
change individual color labels without changing them all. Can anyone provide
some insight on how to do this?
Thanks in advance,
Jake
2002 Oct 18
4
code to turn T into TRUE
Does anyone have code that will methodically process R sourcecode, turning
T's into TRUE and F's into FALSE? I got bored doing this by hand, after the
first 30-odd functions-- there are hundreds left to do. I don't want to
simply deparse everything, because that would destroy my beautiful
formatting.
The reason it's not trivial, is that comment lines, quotes, and split lines
need
2014 Jun 16
2
Print files which would be transfered by rsync (when syncing two directories)
...a contradiction, I
start to have the feeling I have a basic misunderstanding of rsync.
Assume one want to get a list of files which would have been transfered
by rsync if rsync was requested to sync directories X and Y and one does
<code>
X=`mktemp`
echo "abc" > $X/1
echo "abc1" > $X/2
Y=`mktemp`
echo "abc" > $Y/1
echo "abc2" > $Y/2
</code>
then I'd expect rsync to update the file $Y/2 with the content of $X/2
and `rsync --dry-run --info=COPY -r -c $X $Y` should print $Y/2 (or
$X/2, this isn't part of my problem), but it pri...
2015 Dec 10
2
Bug: windows server 2012R2 fails to start after virt-resize
...to.
If I execute
>guestfish -a win2012.hdd -v
...
><fs> debug sh 'sgdisk -p /dev/sda'
guestfsd: main_loop: new request, len 0x54
/bin/sh -c sgdisk -p /dev/sda
Disk /dev/sda: 136314880 sectors, 65.0 GiB
Logical sector size: 512 bytes
Disk identifier (GUID): B3108127-1775-47B7-ABC1-A56D6761C894
Partition table holds up to 128 entries
First usable sector is 34, last usable sector is 136314846
Partitions will be aligned on 2048-sector boundaries
Total free space is 2101181 sectors (1.0 GiB)
Number Start (sector) End (sector) Size Code Name
1 2048...
2009 Jan 23
1
problem in appending data into*.csv file
Hi all,
I got a problem with appending data into the *.csv file
like
abc<-read.csv("bbb.csv") # reading data from one csv file
abc1<-mean(subset(abc,Group=="A"))
hear i have to creat a .csv file and in that i have to create
column's with names *group, mean* and farther i have to caliculate for
Groups:-A, B, C, D, F
and i have to append data to consicutive rows of groups
can any one suggest how can i farward...
2009 Mar 27
0
read.table on long lines buggy (PR#13626)
...10, GAL2, GAL3,
GAL4, GAL7, GAL80, GCY1, GDA1, GDB1, GFA1, GIP2, GLC3, GLC7, GLC8, GLG1, GLG2,
GLK1, GLO2, GLO4, GNA1, GND1, GND2, GNT1, GPH1, GPM1, GRE3, GSC2, GSY1, GSY2,
GTB1, GUT2, HAP4, HKR1, HOC1, HOR2, HPF1, HXK1, HXK2, HXT4, ICL1, IMP2', INM1,
INM2, ITR1, KAR2, KEG1, KNH1, KRE2, KRE5\nc:ABC1")
> read.table("tst1", sep=":", stringsAsFactors=F)[,1]
[1] "c"
Warning message:
In read.table("tmp1", sep = ":", stringsAsFactors = F) :
incomplete final line found by readTableHeader on 'tmp1'
> cat(file="tst2", &qu...
2008 Feb 13
0
ACLs - what's the state of play?
...A have all of their currently existing folders
accessible
by others, along with any folders they create in the future?
* Is there support for the IMAP ACL extension, enabling users to set
and manage access rights themselves from their mail client?
* If system username "abc1" has made their top-level folder
"Project"
accessible by system username "def2", how does def2 actually
specify
the folder in order to open it?
I have rummaged through the archives and Wiki but mostly these still
talk about the magical "dovecot-share...
2015 Jul 28
0
Fedora change that will probably affect RHEL
...y is about 2 seconds. I can?t see that sshd has any rate-limiting built into it, but it does limit the number of unauthenticated connections to 100 by default in EL7. Together, this means a small botnet could try 50 guesses at a single account?s password per second.
The current non-policy allows abc1 as a password. According to:
https://www.grc.com/haystack.htm
?that password can be brute-forced in about half an hour at 1000 guesses per second, or 4 days at 50/sec. Your 7-day window is too short, if you don?t institute *some* kind of password quality minima.
Also keep in mind that the GR...
2015 Jul 28
5
Fedora change that will probably affect RHEL
On Tue, Jul 28, 2015 at 11:27 AM, Warren Young <wyml at etr-usa.com> wrote:
> Much of the evil on the Internet today ? DDoS armies, spam spewers, phishing botnets ? is done on pnwed hardware, much of which was compromised by previous botnets banging on weak SSH passwords.
>
> Your freedom to use any password you like stops at the point where exercising that freedom creates a risk
2015 Dec 10
3
Re: Bug: windows server 2012R2 fails to start after virt-resize
...>> ><fs> debug sh 'sgdisk -p /dev/sda'
>> guestfsd: main_loop: new request, len 0x54
>> /bin/sh -c sgdisk -p /dev/sda
>> Disk /dev/sda: 136314880 sectors, 65.0 GiB
>> Logical sector size: 512 bytes
>> Disk identifier (GUID): B3108127-1775-47B7-ABC1-A56D6761C894
>> Partition table holds up to 128 entries
>> First usable sector is 34, last usable sector is 136314846
>> Partitions will be aligned on 2048-sector boundaries
>> Total free space is 2101181 sectors (1.0 GiB)
>>
>> Number Start (sector) End (sec...
Unable to figure out why a photo attribute of the paperclip plugin is not being passed in as a param
2011 May 20
4
Unable to figure out why a photo attribute of the paperclip plugin is not being passed in as a param
...VzZWR7ADoMY3NyZl9pZCIlZjQ5NWYyNDAxNDVjNmZkOGU5%0AZjM0ZjJjOTZlOTRlM2I%3D--a30d15cac639bde46b5d57218084da993caf094b
Parameters: {"commit"=>"Create",
"post"=>{"photo"=>#<File:/tmp/CGI20110520-5743-u5iauq-0>,
"message"=>"abc1"},
"authenticity_token"=>"1c19641bd05adb24157f5f1d04b4c8e072cb7ebe",
"action"=>"create", "controller"=>"posts"}
Post Columns (0.000975) SHOW FIELDS FROM `posts`
SQL (0.000199) BEGIN
Post Crea...
2015 Jul 29
1
Fedora change that will probably affect RHEL
...t 2 seconds. I can?t see that sshd has any rate-limiting built into it, but it does limit the number of unauthenticated connections to 100 by default in EL7. Together, this means a small botnet could try 50 guesses at a single account?s password per second.
>
> The current non-policy allows abc1 as a password. According to:
>
> https://www.grc.com/haystack.htm
>
> ?that password can be brute-forced in about half an hour at 1000 guesses per second, or 4 days at 50/sec. Your 7-day window is too short, if you don?t institute *some* kind of password quality minima.
It was a nu...
2014 Oct 30
4
roaming profile does not work for "Domain Admins"
I am facing an issue which I cannot explain myself. The roaming profiles don't work for users that are members of the group "Domain Admins". The [profiles] share on the member server was configured exactly as explained on the wiki for roaming profiles. It works like a charm for all domain users, *BUT*: if a user is member of the group "Domain Admins" it *doesn't* :-(
2015 Dec 10
0
Re: Bug: windows server 2012R2 fails to start after virt-resize
...a win2012.hdd -v
> ...
> ><fs> debug sh 'sgdisk -p /dev/sda'
> guestfsd: main_loop: new request, len 0x54
> /bin/sh -c sgdisk -p /dev/sda
> Disk /dev/sda: 136314880 sectors, 65.0 GiB
> Logical sector size: 512 bytes
> Disk identifier (GUID): B3108127-1775-47B7-ABC1-A56D6761C894
> Partition table holds up to 128 entries
> First usable sector is 34, last usable sector is 136314846
> Partitions will be aligned on 2048-sector boundaries
> Total free space is 2101181 sectors (1.0 GiB)
>
> Number Start (sector) End (sector) Size Code...
2006 Feb 20
2
glob2rx function not working
Dear R users,
Inspired by previous list discussion of the glob2rxc function, I am
attempting to create a new vector called TOTAL by summing all vectors
whose names begin with ABC:
TOTAL = sum(list = ls(pattern = glob2rx("ABC*")))
I'm running R 2.2.1 on Windows XP. Can anyone say what I'm missing?
Thank you, Mark
2011 Aug 22
2
Extracting columns with specific string in their names
Hi,
Let's say that I have a set of column names that begin with the string
"Xyz". How do I extract these specific columns? I tried to do the
following:
dataframe1[,grep("Xyz",colnames(dataframe1))]
But it does not work. What is wrong with my expression?
2007 Jan 08
2
rsync - 2.6.8 ( broken pipe )
...in rsync protocol data stream
(code 12) at io.c(1119) [generator=2.6.8]
2007/01/09 02:11:37 [1084] connect from su01e01 (172.16.1.81)
2007/01/09 02:11:37 [1084] rsync to ssr_data from su01e01 (172.16.1.81)
2007/01/09 02:11:38 [1084] recv su01e01 [172.16.1.81] ssr_data ()
test/30MIN/01:09:2007/ABC1 3146240
2007/01/09 02:11:38 [1084] recv su01e01 [172.16.1.81] ssr_data ()
test/30MIN/01:09:2007/ABC2 1180160
2007/01/09 02:11:38 [1084] rsync: connection unexpectedly closed (50265
bytes received so far) [receiver]
2007/01/09 02:11:39 [1084] rsync: connection unexpectedly closed (34103
bytes rec...