Displaying 3 results from an estimated 3 matches for "aaflist".
2003 Sep 05
2
S4 Method Collisions with "[" (PR#4075)
...ing on how both packages are loaded, the Biobase definitions seem to be
getting masked out:
> library(Biobase)
> library(annaffy)
> showMethods("[")
Function "[":
x = "ANY"
x = "container"
x = "phenoData"
x = "exprSet"
x = "aafList"
x = "aafTable"
> library(annaffy)
(annaffy loads Biobase in .First.lib)
> showMethods("[")
Function "[":
x = "ANY"
x = "aafList"
x = "aafTable"
2003 Sep 02
1
completeSubclasses() methods bug (PR#4051)
...> library(annaffy)
Error in setIs(class2, obji@superClass, extensionObject = obji, doComplete =
FALSE) :
Cannot create a setIs relation when neither of the classes ("aafGO" and
"list") is local and modifiable in this package
Error in setClass("aafGO", "aafList", prototype = list(), where = where) :
Error in contained classes ("aafList") for class "aafGO"; class
definition removed from "annaffy"
Error in library(annaffy) : .First.lib failed
2008 Jan 03
1
help with combining matrix and list into dataframe
...been generated from the aanaffy package. Following is an
example of the list (symbols) :
[[1]]
[1] "Smc4"
attr(,"class")
[1] "aafSymbol"
[[2]]
[1] "Mcm3"
attr(,"class")
[1] "aafSymbol"
attr(,"class")
[1] "aafList"
I want to combine the data in the matrix with the corresponding gene symbols
in the list symbols. The order in which the gene symbols are stored in
symbols
is the same as the order in the matrix.
Currently the code I have written is as follows:
for (i in 1:length(symbols)){...