search for: _r_check_length_1_logic2_

Hi, I'm not sure where we are in getting CRAN packages getting their _R_CHECK_LENGTH_1_LOGIC2_=true bugs fixed (*), but maybe it'd help to make _R_CHECK_LENGTH_1_LOGIC2_=warn the new default in the upcoming R 3.6.2? Warnings of type: $ R --vanilla > Sys.setenv("_R_CHECK_LENGTH_1_LOGIC2_" = "warn") > c(TRUE, FALSE) && TRUE [1] TRUE Warning message: In c(...

...Maechler <maechler at stat.math.ethz.ch> wrote: > > >>>>> Henrik Bengtsson > >>>>> on Sun, 17 Nov 2019 20:42:32 -0800 writes: > > > Hi, > > > I'm not sure where we are in getting CRAN packages getting their > > _R_CHECK_LENGTH_1_LOGIC2_=true bugs fixed (*), but maybe it'd help to > > make _R_CHECK_LENGTH_1_LOGIC2_=warn the new default in the upcoming R > > 3.6.2? > > Interesting, I had similar thoughts the last few days > ... but not for R 3.6.x --- I think it's out of the question to > do t...

>>>>> Henrik Bengtsson >>>>> on Sun, 17 Nov 2019 20:42:32 -0800 writes: > Hi, > I'm not sure where we are in getting CRAN packages getting their > _R_CHECK_LENGTH_1_LOGIC2_=true bugs fixed (*), but maybe it'd help to > make _R_CHECK_LENGTH_1_LOGIC2_=warn the new default in the upcoming R > 3.6.2? Interesting, I had similar thoughts the last few days ... but not for R 3.6.x --- I think it's out of the question to do that for a "minor" u...

...chler at stat.math.ethz.ch> wrote: >>>>>>> Henrik Bengtsson >>>>>>> on Sun, 17 Nov 2019 20:42:32 -0800 writes: >> > Hi, >> >> > I'm not sure where we are in getting CRAN packages getting their >> > _R_CHECK_LENGTH_1_LOGIC2_=true bugs fixed (*), but maybe it'd help to >> > make _R_CHECK_LENGTH_1_LOGIC2_=warn the new default in the upcoming R >> > 3.6.2? >> >> Interesting, I had similar thoughts the last few days >> ... but not for R 3.6.x --- I think it's out of the...

...00 writes: > Thank you. > To correct myself, I can indeed reproduce this with R --vanilla too. > A reproducible example is: > $ R --vanilla > R version 3.6.0 Patched (2019-05-31 r76629) -- "Planting of a Tree" > ... >> Sys.setenv("_R_CHECK_LENGTH_1_LOGIC2_" = "true") >> loadNamespace("oligo") > Error in omittedSig && (signature[omittedSig] != "missing") : > 'length(x) = 4 > 1' in coercion to 'logical(1)' > Error: unable to load R code in package ?oligo?...

DISCLAIMER: I can not get this error with R --vanilla, so it only occurs when some other package is also loaded. I don't have time to find to narrow that down for a reproducible example, but I believe the following error in R 3.6.0: > Sys.setenv("_R_CHECK_LENGTH_1_LOGIC2_" = "true") > library(oligo) Error in omittedSig && (signature[omittedSig] != "missing") : 'length(x) = 4 > 1' in coercion to 'logical(1)' Error: unable to load R code in package 'oligo' is because of a '_R_CHECK_LENGTH_1_LOGIC2_=...

Thank you. To correct myself, I can indeed reproduce this with R --vanilla too. A reproducible example is: $ R --vanilla R version 3.6.0 Patched (2019-05-31 r76629) -- "Planting of a Tree" ... > Sys.setenv("_R_CHECK_LENGTH_1_LOGIC2_" = "true") > loadNamespace("oligo") Error in omittedSig && (signature[omittedSig] != "missing") : 'length(x) = 4 > 1' in coercion to 'logical(1)' Error: unable to load R code in package ?oligo? /Henrik On Sun, Jun 23, 2019 at 1:54...

...te: > > DISCLAIMER: I can not get this error with R --vanilla, so it only > occurs when some other package is also loaded. I don't have time to > find to narrow that down for a reproducible example, but I believe the > following error in R 3.6.0: > >> Sys.setenv("_R_CHECK_LENGTH_1_LOGIC2_" = "true") >> library(oligo) > Error in omittedSig && (signature[omittedSig] != "missing") : > 'length(x) = 4 > 1' in coercion to 'logical(1)' > Error: unable to load R code in package 'oligo' > > is because of a ...

...gt;>> To correct myself, I can indeed reproduce this with R --vanilla too. >>> A reproducible example is: >> >>> $ R --vanilla >>> R version 3.6.0 Patched (2019-05-31 r76629) -- "Planting of a Tree" >>> ... >>>> Sys.setenv("_R_CHECK_LENGTH_1_LOGIC2_" = "true") >>>> loadNamespace("oligo") >>> Error in omittedSig && (signature[omittedSig] != "missing") : >>> 'length(x) = 4 > 1' in coercion to 'logical(1)' >>> Error: unable to load R code in packa...

...t; > To correct myself, I can indeed reproduce this with R --vanilla too. > > A reproducible example is: > > > $ R --vanilla > > R version 3.6.0 Patched (2019-05-31 r76629) -- "Planting of a Tree" > > ... > >> Sys.setenv("_R_CHECK_LENGTH_1_LOGIC2_" = "true") > >> loadNamespace("oligo") > > Error in omittedSig && (signature[omittedSig] != "missing") : > > 'length(x) = 4 > 1' in coercion to 'logical(1)' > > Error: unable to load R code in p...

...R --vanilla too. >>>>> A reproducible example is: >>>> >>>>> $ R --vanilla >>>>> R version 3.6.0 Patched (2019-05-31 r76629) -- "Planting of a Tree" >>>>> ... >>>>> Sys.setenv("_R_CHECK_LENGTH_1_LOGIC2_" = "true") >>>>> loadNamespace("oligo") >>>>> Error in omittedSig && (signature[omittedSig] != "missing") : >>>>> 'length(x) = 4 > 1' in coercion to 'logical(1)' >>>>&g...

...yself, I can indeed reproduce this with R --vanilla too. >>>> A reproducible example is: >>> >>>> $ R --vanilla >>>> R version 3.6.0 Patched (2019-05-31 r76629) -- "Planting of a Tree" >>>> ... >>>>> Sys.setenv("_R_CHECK_LENGTH_1_LOGIC2_" = "true") >>>>> loadNamespace("oligo") >>>> Error in omittedSig && (signature[omittedSig] != "missing") : >>>> 'length(x) = 4 > 1' in coercion to 'logical(1)' >>>> Error: unable to load...

>>>>> Henrik Bengtsson >>>>> on Thu, 27 Jun 2019 16:00:39 -0700 writes: > Using: > > untrace(methods::conformMethod) > at <- c(12,4,3,2) > str(body(methods::conformMethod)[[at]]) > ## language omittedSig <- omittedSig && (signature[omittedSig] != "missing") > cc <- 0L > trace(methods::conformMethod, tracer =

>>>>> peter dalgaard >>>>> on Fri, 28 Jun 2019 16:20:03 +0200 writes: > > On 28 Jun 2019, at 16:03 , Martin Maechler <maechler at stat.math.ethz.ch> wrote: > > > >>>>>> Henrik Bengtsson > >>>>>> on Thu, 27 Jun 2019 16:00:39 -0700 writes: > > > >> Using: > >> > >>

...;>>>> A reproducible example is: > >>>> > >>>>> $ R --vanilla > >>>>> R version 3.6.0 Patched (2019-05-31 r76629) -- "Planting of a Tree" > >>>>> ... > >>>>> Sys.setenv("_R_CHECK_LENGTH_1_LOGIC2_" = "true") > >>>>> loadNamespace("oligo") > >>>>> Error in omittedSig && (signature[omittedSig] != "missing") : > >>>>> 'length(x) = 4 > 1' in coercion to 'logical(1)' >...

In 'conformMethod', there is another instance of omittedSig & <something about signature[omittedSig]> . It just affects error message. Original: ? ? if(any(is.na(match(signature[omittedSig], c("ANY", "missing"))))) { ? ? ? ? bad <- omittedSig & is.na(match(signature[omittedSig], c("ANY", "missing"))) After r76756: ? ? if(any(iiN

...ngFSet", slots = c(x = "numeric")) > if(!is.null(getGeneric("oligoFn"))) removeGeneric("oligoFn") > setGeneric("oligoFn", > function(object, subset, target, value) { standardGeneric("oligoFn") }) > Sys.unsetenv("_R_CHECK_LENGTH_1_LOGIC2_") ## << added here, to compare with R 3.6.0, 3.5.3, .. > setMethod("oligoFn", signature(object = "tilingFSet", value="array"), ## Method _ 1 _ > function(object, value) { list(object=object, value=value) }) > setMethod("oligoFn&quot...

>>>>> Ben Bolker >>>>> on Mon, 13 Jan 2020 11:49:09 -0500 writes: > From R NEWS (changes in 3.6.0) > Experimentally, setting environment variable _R_CHECK_LENGTH_1_LOGIC2_ > will lead to warnings (or errors if the variable is set to a ?true? > value) when && or || encounter and use arguments of length more than one. Indeed, thank you, Ben. Note (Dirk) this is not just something "by Henrik (..) as he tried to convince us all to use it...

...te: Sat, 29 Jun 2019 22:44:49 +0200 From: Martin Maechler <maechler at stat.math.ethz.ch> To: R-devel <r-devel at r-project.org>, Henrik Bengtsson <henrik.bengtsson at gmail.com> Cc: Martin Maechler <maechler at stat.math.ethz.ch> Subject: Re: [Rd] methods package: A _R_CHECK_LENGTH_1_LOGIC2_=true error Message-ID: <23831.52673.201433.320952 at stat.math.ethz.ch> Content-Type: text/plain; charset="utf-8" >>>>> Martin Maechler >>>>> on Sat, 29 Jun 2019 12:05:49 +0200 writes: >>>>> Martin Maechler >>>>&...

Hi everyone The following behavior (in R 3.6.1 and R-devel r77040) caught me by surprise today: truthy <- c(TRUE, FALSE) falsy <- c(FALSE, TRUE, FALSE) if (truthy) "check" #> Warning in if (truthy) "check": the condition has length > 1 and only the #> first element will be used #> [1] "check" if (falsy) "check" #> Warning in if