search for: _by_

Contrary to other functions in 'base', attach() output messages to stdout instead of stdout, e.g. > a <- 1 > capture.output(attach(list(a=1))) [1] "The following object is masked _by_ .GlobalEnv:" [2] "" [3] " a" Shouldn't this message go to stderr? Here's a patch for the local function checkConflicts() of base::attach(), cf. ditto for base::library() that outputs to stderr: Index: library/base/R/attach.R ===================================...

...ve a couple of standart functions like dim() and length() overloaded. #Example dim.Model <- function(this) { length(unique(this$.variables)); } I built my package, but when I try to load it... This message appears: Attaching package 'mudim': The following object(s) are masked _by_ .GlobalEnv : dim.Model,...(etc.) Any idea, how to hide this message? Thanks for your ideas. Vaclav ************************************************ _____ /_____-_\ http://www.kratochvil.biz [] \o\ _|_ /o/ [] email: Vaclav@Krat...

...on that would return an tree structure I can plot. I ran the test code of subtree following the instruction on?http://finzi.psych.upenn.edu/library/extracat/html/subtree.html However, an error message popped up: ====> library(extracat) Attaching package: ?extracat? The following object is masked _by_ ?.GlobalEnv?: ? ? subtreehc <- hclust(dist(USArrests), "ave")>?> hcs <- subtree(hc, k = 7)Error in subtree(hc, k = 7) : unused argument (k = 7) === Can anyone help me what happened here? And what should I do with it? Thank you very much! Ace [[alternative HTML version delete...

...and carry out the R function in it. It shows C function is not in load table as follows. Would you tell me what is the problem? Where do I make mistake? Maggie [Previously saved workspace restored] > library(var) Attaching package 'var': The following object(s) are masked _by_ .GlobalEnv : b > wxt0124() Error in .C("wxt1221") : C function name not in load table

...i.cl,rand=123) Loading required package: affy Loading required package: affyio EBAM Analysis for the two class unpaired case. Warning: There are 1 genes which have variance Zero or no non-missing values. The d-value of these genes is set to NA. The following object(s) are masked _by_ .GlobalEnv : n The following object(s) are masked from mat.repeat ( position 5 ) : center log.bino n p success x1 x2 x3 x4 x5 Error in optim(rep(0, 6), neglogLik.repeat, method = "BFGS") : non-finite finite-difference value [1] In addition: Warning m...

...o: I would like to find or initialize a new user and base the find on the users email address, however the user found has to also match one of two possible ''state'' values (passive || pending_singup). While trying to implement this I discovered that the find_or_(initialize| create)_by_* dynamic finders totally and silently ignore any conditions passed. Bug? Should''nt these dynamic finders behave the same as find_by_* or find_all_by_* dynamic finders and use the :conditions passed to them? The documentation seems to indicate that they should. http://api.rubyonrails.org...

hello everyone, i am getting problems in graph plotting. When i attach file after adding color attributes in my data set. i got problem of "GlobalEnv" and masked the followings. Like this >attach(machm) The following object(s) are masked _by_ '.GlobalEnv': coll, sp The following object(s) are masked from 'mach': angle, area, dis, plot, sp >xmach=dis*sin(angle/180*pi); ymach=dis*cos(angle/180*pi) >plot(xmach,ymach, xlim=c(-5,5),ylim=c(-5,5), pch=19, cex= machm$area*0.05,col=machm$coll) Graph did not take...

I'm new to lattice and can't figure out what the problem is with the following example: ######################### > library(lattice) Loading required package: grid Attaching package `lattice': The following object(s) are masked _by_ .GlobalEnv : xyplot The following object(s) are masked from package:base : levels > test.data <- data.frame(x=rnorm(100), + y=rnorm(100), + group=gl(5,20)) > xyplot(y~x|group,data=test.data, + panel=function(x,y,subscripts,...

...impute The following object(s) are masked from package:gtools : permutations The following object(s) are masked from package:foreign : read.octave \end{Soutput} \begin{Soutput} Attaching package: 'xtable' The following object(s) are masked _by_ .GlobalEnv : digits The following object(s) are masked from package:Hmisc : label label<- \end{Soutput} \end{Schunk}

Hi, I am not so sure about an error note I got when using shapiro.test. I imported some data into R by wrinting it into a .txt file via > tab1<-read.table("etc....txt",header=T) > attach(tab1) The following object(s) are masked _by_ .GlobalEnv : ozon > ozon$V1 [1] 2.5 3.0 5.6 4.7 6.5 6.7 1.7 5.3 4.6 7.4 5.4 4.1 5.1 5.6 5.4 6.1 7.6[18] 6.2 6.0 5.5 5.8 8.2 3.1 5.8 2.6 Now I wanted to use the shapiro.test: > shapiro.test(ozon) Fehler in sort.list(x[complete.cases(x)]) : 'x' must be atomic for 'sort.list...

...essary pdftex tools to do this. Maybe it does; I definitely have various directories named 'dvipdfm', 'pdftex', etc on my computer, but I have no idea whether there might be a problem. When I install the package, I receive the message that most of my functions are "masked _by_ .GlobalEnv". I have no idea what this means; I'm sure that this is amply documented, but I confess that I have a rather difficult time with much of the documentation on writing packages. Apologies for the elementary level of these questions, and thanks in advance for your help! ~Dan...

...e=c("norm","basic","perc","bca")) I get normally the four types of confidenec intervals. But form apple X11 public Beta 0.3 I get the following error messages, > library(boot) Attaching package `boot': The following object(s) are masked _by_ .GlobalEnv : boot > data(city) > ratio <- function(d, w) sum(d$x * w)/sum(d$u * w) > city.boot <- boot(city, ratio, R=999, stype="w",sim="ordinary") > boot.ci(city.boot, conf=c(0.90,0.95), type=c("norm","basic","perc",&q...

...i.cl,rand=123) Loading required package: affy Loading required package: affyio EBAM Analysis for the two class unpaired case. Warning: There are 1 genes which have variance Zero or no non-missing values. The d-value of these genes is set to NA. The following object(s) are masked _by_ .GlobalEnv : n The following object(s) are masked from mat.repeat ( position 5 ) : center log.bino n p success x1 x2 x3 x4 x5 Error in optim(rep(0, 6), neglogLik.repeat, method = "BFGS") : non-finite finite-difference value [1] In addition: Warning m...

..." In which case I was wondering if anyone could help me out by explaining how I can find the covariance matrix equivalent without using vcov? The code and error messages I got for vcov are as follows. > vcov(paper_size_type_income) The following object(s) are masked _by_ .GlobalEnv : child id paper Error in gamlssNonLinear(family = RG, data = paper3, y = paper, mu.formula = paper ~ : NAs in y - use na.omit() I then try using na.omit and I get a different error message (even though there are no NA''s in the data set, I checked usin...

...able to make graphs and Aeventexhumed still works in the analysis. Can I ignore this message or do I need to do something about this? Jean > require(plyr) Loading required package: plyr > turtlehatch <- read.csv(file.choose()) > attach(turtlehatch) The following object(s) are masked _by_ '.GlobalEnv': Aeventexhumed, DeadHatch, ExDate, Hatchlings, MaxHatch, Oldeggs, Quadrat, QuadratEvent, ST0, ST1, ST2, ST3, ST4, Sector, Shells, TotalEggs -- View this message in context: http://r.789695.n4.nabble.com/masked-by-GlobalEnv-tp4628664.html Sent from the R help mailing l...

...############################################################################# local({pkg <- select.list(sort(.packages(all.available = TRUE)),graphics=TRUE) + if(nchar(pkg)) library(pkg, character.only=TRUE)}) Attaching package: 'RcmdrPlugin.FactoMineR' The following object(s) are masked _by_ '.GlobalEnv': ??? defmacro, FactoAFDM, FactoCA, Factocatdes, FactoDMFA, FactoGPA, ??? FactoHCPC, FactoHMFA, FactoMCA, FactoMFA, FactoPCA, Factoprefpls, ??? readDataSetFacto The following object(s) are masked from 'package:Rcdr': ??? defmacro #########################################...

...nt1 ("attach_list = ", attach_list) + attach (attach_list) + free_test () + + } > free_test <- function (){ + print ("entering free_test") + print1 ("i") + return () + + } > [1] "attach_list = " $i [1] 25 The following object(s) are masked _by_ .GlobalEnv : i [1] "entering free_test" [1] "i" Error in print(value) : argument "value" is missing, with no default > --------------------------------------------------------------------- >From Tom: Question 1: Is the idea of using such a variable v...

...1:14, 608, rep=T) > n<- sample(1:14, 1140, rep=T) > vt<-c(h, c, n) > ta<-rep(c("h", "c", "n"), c(319, 608, 1140)) > > to<-data.frame(vt,ta) > library(lattice) Attaching package: 'lattice' The following object(s) are masked _by_ .GlobalEnv : panel.histogram > > > > histogram(~ vt|ta, data=to, layout=c(1,3), type = "count", + panel = function(x, breaks, ...) { + panel.histogram(x = x, breaks = breaks, ...) + hh <- hist(x, breaks = breaks, plot = FALSE) +...

...to see new features/changes/bug fixes. Loading required package: boot Loading required package: survival Loading required package: splines Attaching package: ‘survival’ The following object(s) are masked from ‘package:boot’: aml Attaching package: ‘DAAG’ The following object(s) are masked _by_ ‘.GlobalEnv’: fossilfuel The following object(s) are masked from ‘package:survival’: lung The following object(s) are masked from ‘package:MASS’: hills [[alternative HTML version deleted]]

Dear R community, I am using R version 2.4.1 GUI 1.18 on an iBook G4 with OS 10.4.10. When I try to load package 'gplots' I get the following message: > library(gplots) Loading required package: gdata Attaching package: 'gdata' The following object(s) are masked _by_ .GlobalEnv : reorder.factor Loading required package: gtools Attaching package: 'gtools' The following object(s) are masked from package:car : logit Error in `parent.env<-`(`*tmp*`, value = NULL) : use of NULL environment is defunct Error: package/namespace load failed for &...