Displaying 3 results from an estimated 3 matches for "__c__sparsematrix".
Did you mean:
__c__csparsematrix
2023 Jul 19
0
proposal for WRE: clarify that use of S4 classes implies use of superclasses
...parseMatrix)
in NAMESPACE and
setClass("whatever", contains = "dgCMatrix")
in R/*.R. After installing the package, I see:
> ns <- asNamespace("TestPackage")
> names(ns)
[1] ".__C__generalMatrix" ".__C__Matrix" ".__C__sparseMatrix"
[4] ".__C__compMatrix" ".__C__whatever" "zzz"
[7] ".packageName" ".__C__dsparseMatrix" ".__NAMESPACE__."
[10] ".__C__dMatrix" ".__S3MethodsTable__."
> sort(names(ns))
[1] "...
2025 Jan 18
0
How setClass() may introduce a binary dependency between packages
...class from
Matrix_1.5-1 remaining in the namespace and the lazy-load database of
SeuratObject:
readRDS('SeuratObject/R/SeuratObject.rdx')$variables |> names() |>
grep('sparseM', x = _, value = TRUE)
# [1] ".__C__CsparseMatrix" ".__C__dsparseMatrix" ".__C__sparseMatrix"
SeuratObject:::.__C__CsparseMatrix at validity
# function (object)
# .Call(Csparse_validate, object) # <-- missing in Matrix_1.6-0
# <bytecode: 0x55f1f6ff16a8>
# <environment: namespace:Matrix>
When the SeuratObject namespace is loaded, methods::cacheMetaData sees
the 1.5-1...
2025 Jan 18
0
How setClass() may introduce a binary dependency between packages
...remaining in the namespace and the lazy-load database of
> SeuratObject:
>
> readRDS('SeuratObject/R/SeuratObject.rdx')$variables |> names() |>
> grep('sparseM', x = _, value = TRUE)
> # [1] ".__C__CsparseMatrix" ".__C__dsparseMatrix" ".__C__sparseMatrix"
> SeuratObject:::.__C__CsparseMatrix at validity
> # function (object)
> # .Call(Csparse_validate, object) # <-- missing in Matrix_1.6-0
> # <bytecode: 0x55f1f6ff16a8>
> # <environment: namespace:Matrix>
>
> When the SeuratObject namespace is loaded, metho...