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Hi All: Has anyone analyzed Illumina 550K data using DNAcopy package? I have around 2300 samples. According to Venkatraman and Olshen 2007 paper, it needs about 25 min to run a single sample for Affymetrix 100K. I am afraid it will take too long to analyzed my data. Anybody has an idea? Thanks! Best, -- View this message in context: htt...

Hello, I have been trying to use PXELINUX to boot a non Linux OS (QNX6). It works if I set the image to be of type .bs (BOOT SECTOR). However this only works if the file is below ~550K. If I go over that size the screen gets fill with gargabe ;-) I think that's because the image is meant to be load by the QNX6 loader. It doesn't have a BIOS signature but rather a custom signature. I'm not sure because I don't really know what I'm talking about ! I have tried...

I would like to ask that more flexibility be built into automatically choosing sites for downloading. I have just upgraded to CentOS 5.2. When I look for a mirror, I get many choices from Taiwan. Since I am in Hong Kong this makes sense geographically but .... not in terms of bandwidth. Although Taiwan is very close, it is almost the slowest connection I can make. Some .jp sites are good

..._48 and have run with a raidz2 with 7x300G for a while now, just added another 7x300G raidz2 today but I''ll stick to old information so far. Tried Sol10u2 before, but nfs writes killed every bit of performance, snv_48 works much better in that regard. Working data set is about 1.2TB over ~550k inodes right now. Backend serves data to 2-4 linux frontends running Apache (with local raid0 mod_disk_cache), rsync (looking through entire debian trees every now and then) and vsftp (not used much). There are (at least?) two types of performance issues we''ve run into.. 1. DNLC-through-...

...imnames' [2] not equal to array extent In addition: Warning message: In names(nmiss)[jz] <- fname[asm != 9] : number of items to replace is not a multiple of replacement length ---- The sessionInfo() output is below, but I think relatively unremarkable. The dataset is very large (about 550K observations, although the outcome (B_fainting) is relatively sparse with only 1500 events in this sample. I do not get this error when the interaction term is replaced by two categorical variables (data not shown). I can replicate this error when there is just one continuous variable and o...

I am planning to replace our cisco 7200 core router with Linux. We currently serve around 1500 (3/4 DSL - different router) customers with probably half of them being concurrent at any given time. We have a fiber network and customers currently aren''t managed as far as how much bandwidth they can use at anytime. Therefore I have constructed a working tc qdisc Linux router as a test. It

...cvs module, the nightly tester showed the following: x86 Linux debug: * hard to say. I think it failed because the check in occurred just as it was starting up. Could someone verify for me? No results were produced. x86 Linux optimized: * everything ran okay * loc graph now shows 550k lines (up 350k!) - not sure what that's all about. I'll look at the loc counting code. It should have gone DOWN. x86 FreeBSD: * hasn't run with changes yet PPC Darwin: * hasn't run with changes yet SPARC V9 Solaris: * hasn't run with changes yet. We'll ha...

...llowing: > > x86 Linux debug: > * hard to say. I think it failed because the check in occurred just > as it was starting up. Could someone verify for me? No results > were produced. > > x86 Linux optimized: > * everything ran okay > * loc graph now shows 550k lines (up 350k!) - not sure what that's > all about. I'll look at the loc counting code. It should have gone > DOWN. > > x86 FreeBSD: > * hasn't run with changes yet > > PPC Darwin: > * hasn't run with changes yet > > SPARC V9 Solaris:...

Hi Ya'll I'm trying to install the zoo library... I've downloaded about 5 or 6 of their releases (inc. the latest one), all of them giving me the same syntax error when trying to install... Anyone seen this problem before? its not the "lib" argument that is the problem (ive been installing other packages using this exact format with no problem... just zoo is the problem.

....80M 1s 350K .......... .......... .......... .......... .......... 63% 1.76M 1s 400K .......... .......... .......... .......... .......... 71% 431K 1s 450K .......... .......... .......... .......... .......... 79% 1.77M 0s 500K .......... .......... .......... .......... .......... 87% 1.75M 0s 550K .......... .......... .......... .......... .......... 95% 1.82M 0s 600K .......... .......... .......... 100% 1.87M=1.6s 00:21:16 (405 KB/s) - `paypal.com.tar' saved [645120/645120] sh: line 0: cd: pma: Not a directory gzip: stdin: not in gzip format tar: Child returned...

HI, T5220, S10U4 + patches mdb -k > ::memstat While above is working (takes some time, ideally ::memstat -n 4 to use 4 threads could be useful) mpstat 1 shows: CPU minf mjf xcal intr ithr csw icsw migr smtx srw syscl usr sys wt idl 48 0 0 1922112 9 0 0 8 0 0 0 15254 6 94 0 0 So about 2mln xcalls per second. Let''s check with dtrace:

...ar.palmares.cu 3 204033 0 3.4 s 7.2 s lacteopr.alinet.cu Host/Domain Summary: Messages Received (top 50) ----------------------------------------------- msg cnt bytes host/domain -------- ------- ----------- 222 82827k pr.copextel.com.cu 12 3692k sistemas.copextel.com.cu 10 3658k atm.transtur.cu 7 550k mpc.copextel.com.cu 7 124990 facebookmail.com 6 79677 copextel.com.cu 5 2670k auditoria.copextel.com.cu 4 3453k capacitacion.copextel.com.cu 4 246126 ssp.copextel.com.cu 4 244743 bounce.twitter.com 4 61300 rhumanos.copextel.com.cu 3 3118k pri.onat.gob.cu 3 2365k elecpri.une.cu 3 2061k mincom.gob.cu...

...: > > * hard to say. I think it failed because the check in occurred just > > as it was starting up. Could someone verify for me? No results > > were produced. > > > > x86 Linux optimized: > > * everything ran okay > > * loc graph now shows 550k lines (up 350k!) - not sure what that's > > all about. I'll look at the loc counting code. It should have gone > > DOWN. > > > > x86 FreeBSD: > > * hasn't run with changes yet > > > > PPC Darwin: > > * hasn't run with c...

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