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2012 Mar 15
0
[R-sig-hpc] Debian/Ubuntu + threaded BLAS/ATLAS (solved)
...will give you (after a long while) a bunch of libatlas*.deb files that you can easily install with sudo dpkg -i | | Now if you simply configure R --with-blas --with-lapack it will work, and you'll get a nice and fast BLAS, but unfortunately it will be single-threaded: | | > m=matrix(rnorm(4e6),2e3) | > system.time(tcrossprod(m)) | user system elapsed | 0.684 0.012 0.697 | | The problem is that all those nice libraries that are handled by update-alternatives are just the single-threaded part of ATLAS. If you want to use the parallelized part, you'll need to add the li...
2017 Jun 18
3
R_using non linear regression with constraints
...) , lower = c( 1000, 0 ) , upper = c( 3000, 8.0063 ) ) a2 <- as.vector( coef( myfit2 )[ "a" ] ) b2 <- ( 1000 - exp( as.vector( coef( myfit2 )[ "log1ab" ] ) ) ) / a brks <- c( 500, 1e6, 2e6, 3e6, 4e6 ) ggplot( objdtass2, aes( x=a, y=b, z = x, fill=x ) ) + geom_tile() + geom_contour( breaks = brks ) + geom_point( x=a2, y=b2, colour="red" ) + geom_point( x=objdtass2min$a , y=objdtass2min$b , colour="green" ) + scale_fill_c...
2017 Jun 18
0
R_using non linear regression with constraints
...c( 1000, 0 ) > , upper = c( 3000, 8.0063 ) > ) > a2 <- as.vector( coef( myfit2 )[ "a" ] ) > b2 <- ( 1000 > - exp( as.vector( coef( myfit2 )[ "log1ab" ] ) ) > ) / a > > brks <- c( 500, 1e6, 2e6, 3e6, 4e6 ) > ggplot( objdtass2, aes( x=a, y=b, z = x, fill=x ) ) + > geom_tile() + > geom_contour( breaks = brks ) + > geom_point( x=a2, y=b2, colour="red" ) + > geom_point( x=objdtass2min$a > , y=objdtass2min$b > , colour=&quo...
2017 Jun 18
0
R_using non linear regression with constraints
I ran the following script. I satisfied the constraint by making a*b a single parameter, which isn't always possible. I also ran nlxb() from nlsr package, and this gives singular values of the Jacobian. In the unconstrained case, the svs are pretty awful, and I wouldn't trust the results as a model, though the minimum is probably OK. The constrained result has a much larger sum of squares.
2017 Jun 18
3
R_using non linear regression with constraints
https://cran.r-project.org/web/views/Optimization.html (Cran's optimization task view -- as always, you should search before posting) In general, nonlinear optimization with nonlinear constraints is hard, and the strategy used here (multiplying by a*b < 1000) may not work -- it introduces a discontinuity into the objective function, so gradient based methods may in particular be
2007 Apr 30
0
[LLVMdev] Boostrap Failure -- Expected Differences?
...TION__.21879>: > 4e0: 61 popa > 4e1: 64 fs > 4e2: 6a 75 push $0x75 > - 4e4: 73 74 jae 55a <__FUNCTION__.22434+0x6> > + 4e4: 73 74 jae 55a <__FUNCTION__.22347+0x6> > 4e6: 5f pop %edi > 4e7: 6f outsl %ds:(%esi),(%dx) > 4e8: 66 data16 > 4e9: 66 data16 > - 4ea: 73 65 jae 551 <__FUNCTION__.22282+0x11> > - 4ec: 74 5f je 54d &l...
2007 Apr 27
2
[LLVMdev] Boostrap Failure -- Expected Differences?
The saga continues. I've been tracking the interface changes and merging them with the refactoring work I'm doing. I got as far as building stage3 of llvm-gcc but the object files from stage2 and stage3 differ: warning: ./cc1-checksum.o differs warning: ./cc1plus-checksum.o differs (Are the above two ok?) The list below is clearly bad. I think it's every object file in the