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Hi all, I'm having the same issue as in this previous post: http://r.789695.n4.nabble.com/R-error-td4200447.html#a4209042 And as another user of Biostar: http://www.biostars.org/post/show/42562/cummerbund-isnt-managing-cuffdiff-database/#42895 Whereby I'm trying to output cuffdiff data into cummeRbund, but it appears to be having issues with connection to a database (below). Does anyone have any suggestions as to how I can fix this? Thanks! cuff_data <- readCufflinks('/home/sbica1/tophat/finaltrans/tophat/0125diff_out...

...log.1:42890:Jun 30 17:27:04 mail dovecot: imap: Server shutting down. in=14 out=648 /var/log/mail.log.1:42891:Jun 30 17:27:04 mail dovecot: imap: Server shutting down. in=14 out=648 /var/log/mail.log.1:42893:Jun 30 17:27:04 mail dovecot: imap: Server shutting down. in=14 out=648 /var/log/mail.log.1:42895:Jun 30 17:27:34 mail dovecot: imap: Server shutting down. in=739 out=2081 /var/log/mail.log.1:42896:Jun 30 17:27:34 mail dovecot: imap: Server shutting down. in=1764 out=4027 There's no error|panic|warning|fatal messages in any of the logs. root at mail:~# grep -in dovecot /var/log/syslog | g...