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3507
2007 Aug 16
0
Possible memory leak with large matrices in R v.2.5.0
...ger (Mb) max used (Mb)
Ncells 363023 19.4 5455947 291.4 604878 32.4
Vcells 44434871 339.1 192163339 1466.1 90689707 692.0
>
Subsequent top output:
output from top is:
PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND
1199 waltman 16 0 3507m 3.4g 3216 S 0.0 21.5 29:58.92 R
Thanks for any help or suggestions,
Peter Waltman
p.s. code snippet follows. Note, that I've added extra rm() and gc()
calls w/in the function to try to reduce the memory stamp to no avail.
get.vars.for.cluster = function( cluster,...
2007 Aug 16
2
Possible memory leak with R v.2.5.0
...Mb)
Ncells 363023 19.4 5455947 291.4 604878 32.4
Vcells 44434871 339.1 192163339 1466.1 90689707 692.0
>
Subsequent top output:
output from top is:
PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+
COMMAND
1199 waltman 16 0 3507m 3.4g 3216 S 0.0 21.5 29:58.92 R
Thanks for any help or suggestions,
Peter Waltman
p.s. code snippet follows. Note, that I've added extra rm() and gc()
calls w/in the function to try to reduce the memory stamp to no avail.
get.vars.for.cluster = function( cluster,...