search for: 29t

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2012 Nov 28
1
GSEA package error
Dear R gurus I?m trying to use the GSCA package to a series of microarray data (prostate cancer normal vs tumor (29 vs 29 paired)) but I?m running into some problems. I have a matrix (named /data_final/) with 11k rows(genes) and 60 cols (58 samples (29N vs 29T), GO IDs, KEGG IDs). I also have a separate vector GS with the GO IDs mapped to genes (no duplicate genes but multiple IDs per gene like in col 59) However when I try to run: /singleDC(data_final, group=c(1:29,30,58), GSdefList = GS, nperm = 3, permDI=TRUE)/ I get an error/ ?unused argument(s) (...
2010 Jul 29
3
Fwd: duplicates
-- Eredeti üzenet -- Feladó: Dévaványai Agamemnón <devavanyai@citromail.hu>Címzett: r-hel@r-project.org, r-hel@r-project.orgElküldve: 2010. július 29. 16:29Tárgy : duplicates Sorry! I try it again Dear R Users! I have a dataframe with duplicatecases. Var1 duplicated by var2. var1 var2 var3 var4 var5 1 4 500 1 2 1 3 200 2 5 1 8 125 1 9 2 2 120 2 52 2 6...