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2012 Nov 28
1
GSEA package error
Dear R gurus
I?m trying to use the GSCA package to a series of microarray data (prostate
cancer normal vs tumor (29 vs 29 paired)) but I?m running into some
problems.
I have a matrix (named /data_final/) with 11k rows(genes) and 60 cols (58
samples (29N vs 29T), GO IDs, KEGG IDs).
I also have a separate vector GS with the GO IDs mapped to genes (no
duplicate genes but multiple IDs per gene like in col 59)
However when I try to run:
/singleDC(data_final, group=c(1:29,30,58), GSdefList = GS, nperm = 3,
permDI=TRUE)/
I get an error/ ?unused argume...