search for: 192x24

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2012 Jun 14
1
Can someone recommend a package for SNP cluster analysis of Fluidigm microarrays?
...ve control sample by not including it in any genotype cluster. I'm looking at both nuclear and mitochondrial DNA so hopefully it can be sophisticated enough to set the number of cluster between two or three within the array. These genotyping arrays are either 48 samples x 48 assays, 96x96, or 192x24 and it would be nice if it could accommodate any range of samples and assays. the data headings from the csv are: ID,Assay,Allele Y,Allele X,Name,Type,Auto,Confidence,Final,Converted,Allele Y,Allele X where Allele Y and Allele X are the plotted values and the vectors within the data.frame are 92...