search for: 00new

...rtran/lib -lgfortran As usual, the last challenge seems to be to get rgl installed. Compilation _seems_ to go smoothly, but I now see: Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/Library/Frameworks/R.framework/Versions/3.7/Resources/library/00LOCK-rgl/00new/rgl/libs/rgl.so': dlopen(/Library/Frameworks/R.framework/Versions/3.7/Resources/library/00LOCK-rgl/00new/rgl/libs/rgl.so, 6): Symbol not found: _FT_Attach_File Referenced from: /Library/Frameworks/R.framework/Versions/3.7/Resources/library/00LOCK-rgl/00new/rgl/libs/rgl.so There is a comme...

...still be triggered.): $ Rscript -e "install.packages('dplyr', repos='https://cloud.r-project.org ')" 4. The installation will fail while trying to move the package to its final location: mv: cannot move '/mnt/share/R/x86_64-redhat-linux-gnu-library/4.3/00LOCK-dplyr/00new/dplyr' to '/mnt/share/R/x86_64-redhat-linux-gnu-library/4.3/dplyr': Permission denied ERROR: moving to final location failed 5. Moving the folder as described in the error manually from the shell succeeds: $ mv /mnt/share/R/x86_64-redhat-linux-gnu-library/4.3/00LOCK-dplyr/00new/dply...

...on.? New Debian user here (via WSL on Windows). I've been installing packages (using install.packages) in to /usr/local/lin/R/site-library without problem until I tried to install xml2. When installing it gives the error message: mv: cannot move '/usr/local/lib/R/site-library/00LOCK-xml2/00new/xml2' to '/usr/local/lib/R/site-library/xml2': Permission denied I've added myself to the staff group and other packages have installed without issue. For information I'm running Debian Buster. Any pointers / suggestions as to where I'm going wrong? Regards Tim

...usual, the last challenge seems to be to get rgl installed. Compilation _seems_ to go > smoothly, but I now see: > > > Error in dyn.load(file, DLLpath = DLLpath, ...) : > unable to load shared object '/Library/Frameworks/R.framework/Versions/3.7/Resources/library/00LOCK-rgl/00new/rgl/libs/rgl.so': > dlopen(/Library/Frameworks/R.framework/Versions/3.7/Resources/library/00LOCK-rgl/00new/rgl/libs/rgl.so, 6): Symbol not found: _FT_Attach_File > Referenced from: /Library/Frameworks/R.framework/Versions/3.7/Resources/library/00LOCK-rgl/00new/rgl/libs/rgl.so Perha...

...lation will fail while trying to move the package to its final > >>>>> > > location: > >>>>> > > > >>>>> > > mv: cannot move > >>>>> > > '/mnt/share/R/x86_64-redhat-linux-gnu-library/4.3/00LOCK-dplyr/00new/dplyr' > >>>>> > > to '/mnt/share/R/x86_64-redhat-linux-gnu-library/4.3/dplyr': Permission > >>>>> > > denied > >>>>> > > ERROR: moving to final location failed > >>>>> > > > >>&gt...

...-e expression #1, char 1: unknown command: `C' c:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o penaltyLearning.dll tmp.def interface.o largestContinuousMinimum.o modelSelection.o -LC:/PROGRA~1/R/R-36~1.0/bin/x64 -lR installing to C:/Program Files/R/R-3.6.0/library/00LOCK-penaltyLearning/00new/penaltyLearning/libs/x64 ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'penaltyLearning' finding HTML links ... done GeomTallRect html IntervalRegressionCV...

...e the package to its final >> > >>>>> > > location: >> > >>>>> > > >> > >>>>> > > mv: cannot move >> > >>>>> > > '/mnt/share/R/x86_64-redhat-linux-gnu-library/4.3/00LOCK-dplyr/00new/dplyr' >> > >>>>> > > to '/mnt/share/R/x86_64-redhat-linux-gnu-library/4.3/dplyr': Permission >> > >>>>> > > denied >> > >>>>> > > ERROR: moving to final location failed >> > >>&gt...

...ion ** libs *** arch - i386 echo "test1 is [1] 0.1522111 0.2533619 0.6591809" test1 is [1] 0.1522111 0.2533619 0.6591809 echo "R_HOME is C:/R/R-3.6.2" R_HOME is C:/R/R-3.6.2 echo "Fake library" > testPackage.dll installing to C:/R/R-3.6.2/library/00LOCK-testPackage/00new/testPackage/libs/i38 6 *** arch - x64 echo "test1 is [1] 0.9271811 0.8040735 0.4739104" test1 is [1] 0.9271811 0.8040735 0.4739104 echo "R_HOME is C:/R/R-3.6.2" R_HOME is C:/R/R-3.6.2 echo "Fake library" > testPackage.dll installing to C:/R/R-3.6.2/library/00LOCK-t...

...18.04). The following problem occurs: ** testing if installed package can be loaded from temporary location Error: package or namespace load failed for 'myPackage' in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/usr/local/lib/R/site-library/00LOCK-my_package/00new/myPackage/libs/myPackage.so': /usr/local/lib/R/site-library/00LOCK-my_package/00new/myPackge/libs/myPackage.so: undefined symbol: dgesvx_ Error: loading failed Execution halted ERROR: loading failed This dgesvx_ looked to me like a LAPACK problem ( https://www.netlib.org/lapack/explore-html/...

...l > >> > >>>>> > > location: > >> > >>>>> > > > >> > >>>>> > > mv: cannot move > >> > >>>>> > > > '/mnt/share/R/x86_64-redhat-linux-gnu-library/4.3/00LOCK-dplyr/00new/dplyr' > >> > >>>>> > > to > '/mnt/share/R/x86_64-redhat-linux-gnu-library/4.3/dplyr': Permission > >> > >>>>> > > denied > >> > >>>>> > > ERROR: moving to final location failed >...

...unknown command: `C' > c:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o penaltyLearning.dll > tmp.def interface.o largestContinuousMinimum.o modelSelection.o > -LC:/PROGRA~1/R/R-36~1.0/bin/x64 -lR > installing to C:/Program > Files/R/R-3.6.0/library/00LOCK-penaltyLearning/00new/penaltyLearning/libs/x64 > ** R > ** data > ** byte-compile and prepare package for lazy loading > ** help > *** installing help indices > converting help for package 'penaltyLearning' > finding HTML links ... done > GeomTallRect...

...> >>>>> > > location: >> >> > >>>>> > > >> >> > >>>>> > > mv: cannot move >> >> > >>>>> > > >> '/mnt/share/R/x86_64-redhat-linux-gnu-library/4.3/00LOCK-dplyr/00new/dplyr' >> >> > >>>>> > > to >> '/mnt/share/R/x86_64-redhat-linux-gnu-library/4.3/dplyr': Permission >> >> > >>>>> > > denied >> >> > >>>>> > > ERROR: moving to final locat...

I'm observing that the new staged installation in R 3.6.0 can produce: mv: cannot move ?/home/alice/R/x86_64-pc-linux-gnu-library/3.6/00LOCK-codetools/00new/codetools? to ?/home/alice/R/x86_64-pc-linux-gnu-library/3.6/codetools?: File exists ERROR: moving to final location failed on some file systems. # EXAMPLE $ R --vanilla R version 3.6.0 (2019-04-26) -- "Planting of a Tree" Copyright (C) 2019 The R Foundation for Statistical Computing...

...c:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o > penaltyLearning.dll > > tmp.def interface.o largestContinuousMinimum.o modelSelection.o > > -LC:/PROGRA~1/R/R-36~1.0/bin/x64 -lR > > installing to C:/Program > > > Files/R/R-3.6.0/library/00LOCK-penaltyLearning/00new/penaltyLearning/libs/x64 > > ** R > > ** data > > ** byte-compile and prepare package for lazy loading > > ** help > > *** installing help indices > > converting help for package 'penaltyLearning' > > finding HTML links ... done > >...

...-std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o mclust.so dmvnorm.o init.o mclust.o mclustaddson.o -llapack -lblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR installing to /home/marc/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-mclust/00new/mclust/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading I have wait for all night, but the installation is still stuck at the same point. Does anybody know how to solve this? I have installed different pac...

...is empty. /Henrik > > Best > Tomas > > > On 5/5/19 4:35 AM, Henrik Bengtsson wrote: > > I'm observing that the new staged installation in R 3.6.0 can produce: > > > > mv: cannot move > > ?/home/alice/R/x86_64-pc-linux-gnu-library/3.6/00LOCK-codetools/00new/codetools? > > to ?/home/alice/R/x86_64-pc-linux-gnu-library/3.6/codetools?: File > > exists > > ERROR: moving to final location failed > > > > on some file systems. > > > > # EXAMPLE > > > > $ R --vanilla > > R version 3.6.0 (2019-04-26...

...(via WSL on Windows). I've been installing packages > (using install.packages) in to /usr/local/lin/R/site-library without > problem until I tried to install xml2. When installing it gives the > error message: > > mv: cannot move '/usr/local/lib/R/site-library/00LOCK-xml2/00new/xml2' > to '/usr/local/lib/R/site-library/xml2': Permission denied > > I've added myself to the staff group and other packages have installed > without issue. For information I'm running Debian Buster. > > Any pointers / suggestions as to where I'm going...

...able to reproduce but we could fall back to copy like on Windows. Best Tomas On 5/5/19 4:35 AM, Henrik Bengtsson wrote: > I'm observing that the new staged installation in R 3.6.0 can produce: > > mv: cannot move > ?/home/alice/R/x86_64-pc-linux-gnu-library/3.6/00LOCK-codetools/00new/codetools? > to ?/home/alice/R/x86_64-pc-linux-gnu-library/3.6/codetools?: File > exists > ERROR: moving to final location failed > > on some file systems. > > # EXAMPLE > > $ R --vanilla > R version 3.6.0 (2019-04-26) -- "Planting of a Tree" > Copyright...

...bin/g++ -shared -s -static-libgcc -o >> penaltyLearning.dll >>> tmp.def interface.o largestContinuousMinimum.o modelSelection.o >>> -LC:/PROGRA~1/R/R-36~1.0/bin/x64 -lR >>> installing to C:/Program >>> >> Files/R/R-3.6.0/library/00LOCK-penaltyLearning/00new/penaltyLearning/libs/x64 >>> ** R >>> ** data >>> ** byte-compile and prepare package for lazy loading >>> ** help >>> *** installing help indices >>> converting help for package 'penaltyLearning' >>> finding HTML links...

...t; Best >> Tomas >> >> >> On 5/5/19 4:35 AM, Henrik Bengtsson wrote: >>> I'm observing that the new staged installation in R 3.6.0 can produce: >>> >>> mv: cannot move >>> ?/home/alice/R/x86_64-pc-linux-gnu-library/3.6/00LOCK-codetools/00new/codetools? >>> to ?/home/alice/R/x86_64-pc-linux-gnu-library/3.6/codetools?: File >>> exists >>> ERROR: moving to final location failed >>> >>> on some file systems. >>> >>> # EXAMPLE >>> >>> $ R --vanilla >>&g...