search for: 00check

Hi, 1- How is it possible to use the name of a generic function as the name of a function which is not related to the generic function? For example, if I define predict.my.function, R will relate it to predict function and I'll get the following warning when I run R CMD check * checking S3 generic/method consistency ... WARNING predict: ? function(object, ...) predict.my.function

...after submitting it to CRAN I got an update that it breaks on Debian, see: package heatmaply_0.15.0.tar.gz does not pass the incoming checks automatically, please see the following pre-tests: Windows: <https://win-builder.r-project.org/incoming_pretest/ heatmaply_0.15.0_20180502_082353/Windows/00check.log> Status: OK Debian: <https://win-builder.r-project.org/incoming_pretest/ heatmaply_0.15.0_20180502_082353/Debian/00check.log> Status: 1 ERROR, 1 WARNING Looking at the errors I get, they are all of the type: "SETLENGTH() cannot be applied to an ALTVEC object." I assume thi...

...I recently observed a NOTE on several MaxOS X package checks: sh: line 1: gs: command not found !!! Error: Closing Ghostscript (exit status: 127)! /usr/bin/texi2dvi: thumbpdf exited with bad status, quitting. See for details: http://www.r-project.org/nosvn/R.check/r-release-macosx-ix86/simecol-00check.html or http://www.r-project.org/nosvn/R.check/r-release-macosx-ix86/fxregime-00check.html Does anybody know what's wrong here? Thanks a lot Thomas Petzoldt -- Thomas Petzoldt Technische Universitaet Dresden Institut fuer Hydrobiologie thomas.petzoldt at tu-dresden.de 01062 Dres...

...llo, The package cts on CRAN generated a note on some systems. For instance: checking compiled code ... NOTE File ?/home/ripley/R/Lib32/cts/libs/cts.so?: Found ?abort?, possibly from ?abort? (C) which can be found from the link http://www.r-project.org/nosvn/R.check/r-patched-solaris-sparc/cts-00check.html But the package uses Fortran subroutines only without any C subroutines. In addition, it appears that no stop statement was used in the Fortran subroutines. See the following check results: http://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-gcc-fedora/cts-00check.html I would we...

...ord.html From: man/capturePlot.Rd Status: Error Message: libcurl error code 35 error:14077410:SSL routines:SSL23_GET_SERVER_HELLO:sslv3 alert handshake failure This is reported both by the win-builder and the rhub services: * R 3.3.2: https://win-builder.r-project.org/xj8fwadE4K31/00check.log * R devel: https://win-builder.r-project.org/xj8fwadE4K31/00check.log * R 3.2.5: https://builder.r-hub.io/status/R.devices_2.14.0-9000.tar.gz-a252b2d919124c63bc976d78befce161 AFAIU, this is due to the HTTPS webserver not having SSL3 disabled, e.g. http://unix.stackexchange.com/questions/192944...

Hello: ????? How can someone help me find and fix the following, contained in 00check.log on Debian for "https://github.com/JamesRamsay5/fda": NOTE Found the following files/directories: ? ?fdaMatlabPath.m? * checking for detritus in the temp directory ... OK ????? See: https://win-builder.r-project.org/incoming_pretest/fda_5.1.3_20200416_225207/Debian/00check.log...

...stead, one have to add it to 'Suggests:' field too. Am I wrong or this behavior is unexpected? Best, Serguei. [1] https://github.com/sgsokol/testarma1 <https://github.com/sgsokol/testarma2> [2] https://github.com/sgsokol/testarma2 [3] https://win-builder.r-project.org/v0nBoFleT48y/00check.log [4] https://win-builder.r-project.org/TMKbnEBncFNc/00check.log [5] https://github.com/RcppCore/Rcpp/issues/1026 <https://github.com/sgsokol/testarma2>

...s strange to see NOTE and Error being used interchangeably here. The package is being developed by a couple of us, so I checked that there were no calls to normalizePath in any of our code, and there aren't: darstr at clark-lab:~/Repitools_github/pkg$ grep -r normalizePath . ./Repitools.Rcheck/00check.log:Error : object normalizePath is not exported by 'namespace:utils' ./Repitools.Rcheck/00check.log:Error : object normalizePath is not exported by 'namespace:utils' ./Repitools.Rcheck/tests/tests.Rout.fail:Error : object 'normlizePath' is not exported by 'namespace:uti...

I'm running "R CMD check" for 600+ of the packages that depend on survival, and at the end look for ??? grep Status *.Rcheck/00check.log? | grep ERROR to find any that failed.?? But by accident I just looked at the log for the Greg package, which finishes with the lines found below.? Is the final note of WARNING rather than ERROR on purpose, or an error??? If the former, will adding a search for "Quitting from" suff...

...auto-check process to return the following failure message: Dear maintainer, package survival_3.2-6.tar.gz does not pass the incoming checks automatically, please see the following pre-tests: Windows:<https://win-builder.r-project.org/incoming_pretest/survival_3.2-6_20200925_002515/Windows/00check.log> Status: 1 NOTE Debian:<https://win-builder.r-project.org/incoming_pretest/survival_3.2-6_20200925_002515/Debian/00check.log> Status: 1 NOTE ---------- In the interest of smoothing things out for the CRAN maintainers I would make this message go away, but I don't see how. Below...

Hello, I am receiving this message when uploading my R package to rdevel. https://win-builder.r-project.org/incoming_pretest/180305_110240_Compositional_29/00check.log Can anybody please help? [[alternative HTML version deleted]]

Have UI that simplifies running code from another (internal) package, allowing user to set values on fields I basically grabbed from results of calls to formals() for various functions. That works fine for the most part. But it was requested to investigate some type of popup help or something for each field. Since I already wrote the information in the dot-Rd files for what should be displayed,

...ete check. Checking can be attempted without them by setting the environment variable _R_CHECK_FORCE_SUGGESTS_ to a false value. See section 'The DESCRIPTION file' in the 'Writing R Extensions' manual. * DONE Status: 1 ERROR See '/home/ubuntu/Bioconductor/glmSparseNet.Rcheck/00check.log' for details. ``` Suggested Patch: To return a list of missing dependencies delimited by a comma and a space (", ") so to make it easier for the user to copy and paste this list. This would be especially helpful when the list of missing dependencies is extensive. Example outp...

...go through in my system. CRAN reports the following warning however. * checking for future file timestanps ... WARNING Files with future time stamps: DESCRIPTION NAMESPACE README.md The build log is at https://win-builder.r-project.org/incoming_pretest/eurostat_3.2.7_20180920_004954/Debian/00check.log The package is at https://github.com/rOpenGov/eurostat/ I did not find guidance (search engines, R extensions manual) on how to solve this. Perhaps we would need to generate the files in a certain order but not sure what is the correct order. Any tips? kind regards Leo Lahti [[alternati...

...especially for package developers which might be better in future. Michael On 05/03/2018 10:51, michael tsagris via R-help wrote: > Hello, I am receiving this message when uploading my R package to rdevel. > https://win-builder.r-project.org/incoming_pretest/180305_110240_Compositional_29/00check.log > Can anybody please help? > > ??? [[alternative HTML version deleted]] > > ______________________________________________ > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting...

...a newline. I don't see this in R 3.2.2 RC (2015-08-13 r69049). It seems to have started fairily recently; I spotted this yesterday after starting to get errors in my R.utils check that use capture.output(), cf. https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-clang/R.utils-00check.html Examples: > x <- "a" > cat(x) a> > capture.output(cat(x)) [1] "a" "a" > x <- "a\n" > cat(x) a > capture.output(cat(x)) [1] "a" > x <- "a\nb" > cat(x) a b> > capture.output(cat(x)) [1] &quo...

...enerated on CRAN's Windows systems. The package uses some Fortran subroutines. I would appreciate any advice to eliminate the warnings. By the way, similar warnings were generated to some unrelated R packages as well: https://www.r-project.org/nosvn/R.check/r-oldrel-windows-ix86+x86_64/imputeTS-00check.html. Thanks in advance. Zhu Wang https://www.r-project.org/nosvn/R.check/r-devel-windows-ix86+x86_64/bujar-00check.html * installing *source* package 'bujar' ... ** package 'bujar' successfully unpacked and MD5 sums checked ** R ** data ** inst ** byte-compile and prepare pack...

...?as-cran thinks so. I?ve tried several things and gave myself the weekend to think of other things, but I can?t figure it out. Perhaps someone on the list can lend a hand. Here?s one example situation, where I build the index.html file myself and put it in inst/doc/index.html $ cat fastR.Rcheck/00check.log | grep -v OK * using log directory ?/Users/rpruim/projects/github/fastR/fastR.Rcheck? * using R Under development (unstable) (2014-08-21 r66456) * using platform: x86_64-apple-darwin13.1.0 (64-bit) * using session charset: UTF-8 * checking extension type ... Package * this is package ?fastR? ve...

...my shared library is "excelpoi.so" hence I have added "useDynLib(excelpoi)" to my NAMESPACE file. Prior to this change, my package was passing Rcmd check with no errors or warnings. After this change, I get 5 warnings: whita$grep 'WARN' /home/whita/dvl/excelpoi.Rcheck/00check.log * checking S3 generic/method consistency ... WARNING * checking replacement functions ... WARNING * checking foreign function calls ... WARNING * checking for missing documentation entries ... WARNING * checking for code/documentation mismatches ... WARNING whita$ Can anyone suggest a fix to t...

Hello, I'm getting some error messages from R CMD check I can't deal with. I'm working under Linux with R 1.8.1 The package working directory can be found at: http://www.uni-bayreuth.de/departments/math/org/mathe7/DISTR/distr.tar.gz Here's the 00check.log produced by R CMD check distr * using log directory '/home/tom/studium/R/swp/swp/package/distr.Rcheck' * checking for file 'distr/DESCRIPTION' ... OK * checking if this is a source package ... OK * checking package directory ... OK * checking for portable file names ... OK * ch...