R SIG Fedora - Jan 2015 - [R-sig-Geo] Error installing 'rgdal' on Centos 7

Hello:

I can't install the ' rgdal ' package in R and ' GDAL ' on
CentOS 7
(ELGIS repo added).

Is there any solution?

Thanks

-- 
Manuel Pizarro
EBD-CSIC

Please do not cross-post. Please do provide sufficient information to help 
diagnose your problem (here the output of the ./configure run during 
installation). Almost certainly you are trying to install from source when 
one or more external dependency is not satisfied. Did you read:

http://cran.r-project.org/bin/linux/redhat/README

and note that R-rgdal is *not* provided as a binary?

Did you read:

http://cran.r-project.org/web/packages/rgdal/index.html

Did you download the source package and read the README file, also on 
R-Forge linked from the CRAN page:

https://r-forge.r-project.org/scm/viewvc.php/pkg/inst/README?view=markup&revision=409&root=rgdal

Roger


On Thu, 15 Jan 2015, Manuel Pizarro Gavil?n wrote:
>
> Hello:
>
> I can't install the ' rgdal ' package in R and ' GDAL '
on CentOS 7 (ELGIS
> repo added).
>
> Is there any solution?
>
> Thanks
>
>
-- 
Roger Bivand
Department of Economics, Norwegian School of Economics,
Helleveien 30, N-5045 Bergen, Norway.
voice: +47 55 95 93 55; fax +47 55 95 91 00
e-mail: Roger.Bivand at nhh.no

You don't say exactly what the problem is, but I can give you some
general advice.

The first thing to check on any RPM-based system is that you have the
appropriate development package installed, in this case gdal-devel.

I see that ELGIS does not support CentOS 7, so that might be your
problem. EPEL 7 does include gdal so you might rely on their package.

If neither of these are helpful then you need to be more specific.

Martyn

On Thu, 2015-01-15 at 11:09 +0100, Manuel Pizarro Gavil?n
wrote:
> Hello:
> 
> I can't install the ' rgdal ' package in R and ' GDAL '
on CentOS 7
> (ELGIS repo added).
> 
> Is there any solution?
> 
> Thanks
> 
-----------------------------------------------------------------------
This message and its attachments are strictly confidenti...{{dropped:8}}

Good morning Martyn.

Thank you for your email.

Some details for the problem.

This is the message of the console in R:


------------------
> install.packages("rgdal")
Installing package into  
?/home/aliendist/R/x86_64-redhat-linux-gnu-library/3.1?
(as ?lib? is unspecified)
probando la URL 'http://cran.rstudio.com/src/contrib/rgdal_0.9-1.tar.gz'
Content type 'application/x-gzip' length 1624496 bytes (1.5 Mb)
URL abierta
=================================================downloaded 1.5 Mb

* installing *source* package ?rgdal? ...
** package ?rgdal? successfully unpacked and MD5 sums checked
configure: CC: gcc -m64 -std=gnu99
configure: CXX: g++ -m64
configure: rgdal: 0.9-1
checking for /usr/bin/svnversion... yes
configure: svn revision: 518
configure: gdal-config: gdal-config
checking gdal-config usability...
./configure: line 2119: gdal-config: command not found
no
Error: gdal-config not found
The gdal-config script distributed with GDAL could not be found.
If you have not installed the GDAL libraries, you can
download the source from  http://www.gdal.org/
If you have installed the GDAL libraries, then make sure that
gdal-config is in your path. Try typing gdal-config at a
shell prompt and see if it runs. If not, use:
  --configure-args='--with-gdal-config=/usr/local/bin/gdal-config'
with appropriate values for your installation.

ERROR: configuration failed for package ?rgdal?
* removing ?/home/aliendist/R/x86_64-redhat-linux-gnu-library/3.1/rgdal?
Warning in install.packages :
   installation of package ?rgdal? had non-zero exit status

The downloaded source packages are in
	?/tmp/Rtmpeaf9P4/downloaded_packages?
>
-------------------

I tried to install gdal -dev and gdal but it is impossible.

Regards,
Manuel




Martyn Plummer <plummerm at iarc.fr> escribi?:
> You don't say exactly what the problem is, but I can give you some
> general advice.
>
> The first thing to check on any RPM-based system is that you have the
> appropriate development package installed, in this case gdal-devel.
>
> I see that ELGIS does not support CentOS 7, so that might be your
> problem. EPEL 7 does include gdal so you might rely on their package.
>
> If neither of these are helpful then you need to be more specific.
>
> Martyn
>
> On Thu, 2015-01-15 at 11:09 +0100, Manuel Pizarro Gavil?n wrote:
>> Hello:
>>
>> I can't install the ' rgdal ' package in R and ' GDAL
' on CentOS 7
>> (ELGIS repo added).
>>
>> Is there any solution?
>>
>> Thanks
>>
>
> -----------------------------------------------------------------------
> This message and its attachments are strictly confiden...{{dropped:13}}

Hello Roger:

Thank you for your email.

Some details for the problem.

This is the message of the console in R:


------------------
install.packages("rgdal")
Installing package into  
?/home/aliendist/R/x86_64-redhat-linux-gnu-library/3.1?
(as ?lib? is unspecified)
probando la URL 'http://cran.rstudio.com/src/contrib/rgdal_0.9-1.tar.gz'
Content type 'application/x-gzip' length 1624496 bytes (1.5 Mb)
URL abierta
=================================================downloaded 1.5 Mb

* installing *source* package ?rgdal? ...
** package ?rgdal? successfully unpacked and MD5 sums checked
configure: CC: gcc -m64 -std=gnu99
configure: CXX: g++ -m64
configure: rgdal: 0.9-1
checking for /usr/bin/svnversion... yes
configure: svn revision: 518
configure: gdal-config: gdal-config
checking gdal-config usability...
./configure: line 2119: gdal-config: command not found
no
Error: gdal-config not found
The gdal-config script distributed with GDAL could not be found.
If you have not installed the GDAL libraries, you can
download the source from  http://www.gdal.org/
If you have installed the GDAL libraries, then make sure that
gdal-config is in your path. Try typing gdal-config at a
shell prompt and see if it runs. If not, use:
  --configure-args='--with-gdal-config=/usr/local/bin/gdal-config'
with appropriate values for your installation.

ERROR: configuration failed for package ?rgdal?
* removing ?/home/aliendist/R/x86_64-redhat-linux-gnu-library/3.1/rgdal?
Warning in install.packages :
   installation of package ?rgdal? had non-zero exit status

The downloaded source packages are in
         ?/tmp/Rtmpeaf9P4/downloaded_packages?
-------------------

I tried to install gdal -dev and gdal but it is impossible.

Regards,
Manuel






Roger Bivand <Roger.Bivand at nhh.no> escribi?:
> Please do not cross-post. Please do provide sufficient information  
> to help diagnose your problem (here the output of the ./configure  
> run during installation). Almost certainly you are trying to install  
> from source when one or more external dependency is not satisfied.  
> Did you read:
>
> http://cran.r-project.org/bin/linux/redhat/README
>
> and note that R-rgdal is *not* provided as a binary?
>
> Did you read:
>
> http://cran.r-project.org/web/packages/rgdal/index.html
>
> Did you download the source package and read the README file, also  
> on R-Forge linked from the CRAN page:
>
>
https://r-forge.r-project.org/scm/viewvc.php/pkg/inst/README?view=markup&revision=409&root=rgdal
>
> Roger
>
>
> On Thu, 15 Jan 2015, Manuel Pizarro Gavil?n wrote:
>
>>
>> Hello:
>>
>> I can't install the ' rgdal ' package in R and ' GDAL
' on CentOS 7
>> (ELGIS repo added).
>>
>> Is there any solution?
>>
>> Thanks
>>
>>
>
> -- 
> Roger Bivand
> Department of Economics, Norwegian School of Economics,
> Helleveien 30, N-5045 Bergen, Norway.
> voice: +47 55 95 93 55; fax +47 55 95 91 00
> e-mail: Roger.Bivand at nhh.no

-- 
Manuel Pizarro
EBD-CSIC