Hi: I am working on some code in a package I'm writing and I'm getting
the
warning below when I do
the install on a newly installed fedora 16 OS. But when I run the same
install on windows, I don't get the error. and when I used to run the
install on Fedora 14 ( I missed Fedora 15 ), I didn't get the warning
there either ?
Does anyone know what the problem might be ? Maybe a difference with gcc ?
It's only a warning but it scares me a little because the variables should
be getting used contrary to what the warning says.
Thanks a lot for any hints/suggestions.
My session Info is below and the install output is after that. and happy
holidays to all also. and
#======================================================================
sessionInfo()
R version 2.14.0 (2011-10-31)
Platform: i386-redhat-linux-gnu (32-bit)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
LC_TIME=C LC_COLLATE=C
LC_MONETARY=C LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=C LC_NAME=C
LC_ADDRESS=C LC_TELEPHONE=C
LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] datasets graphics tools grid stats utils grDevices
methods base
other attached packages:
[1] bmod_0.0-10.1 FinTS_0.4-4 numDeriv_2010.11-1
fgui_1.0-2 lmtest_0.9-29 RSQLite_0.10.0
DBI_0.2-5 filehash_2.2
[9] gridExtra_0.8.5 latticeExtra_0.6-19 RColorBrewer_1.0-5
lattice_0.20-0 zoo_1.7-6 chron_2.3-42
loaded via a namespace (and not attached):
[1] tcltk_2.14.0>
#=====================================================================
OUTPUT WHEN INSTALLING THE PACKAGE
#========================================================================
:~/research/R/Rlibs/library> R CMD INSTALL -l . bmod_0.0-10.1.tar.gz
[1] "LC_CTYPE=C;LC_NUMERIC=C;LC_
TIME=C;LC_COLLATE=C;LC_MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER=C;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C"
[1] "LOADING MASS LIBRARY"
[1] "LOADING LATTICE LIBRARY"
* installing *source* package 'bmod' ...
** libs
gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2 -g
-pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom
-fasynchronous-unwind-tables -c ar1_functions.c -o ar1_functions.o
ar1_functions.c: In function ‘calc_ar1_hessian’:
ar1_functions.c:261:10: warning: variable ‘phigrad’ set but not used
[-Wunused-but-set-variable]
ar1_functions.c:260:10: warning: variable ‘alphagrad’ set but not used
[-Wunused-but-set-variable]
ar1_functions.c:259:10: warning: variable ‘betagrad’ set but not used
[-Wunused-but-set-variable]
ar1_functions.c:258:10: warning: variable ‘rhograd’ set but not used
[-Wunused-but-set-variable]
gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2 -g
-pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom
-fasynchronous-unwind-tables -c ma1_functions.c -o ma1_functions.o
ma1_functions.c: In function ‘calc_ma1_hessian’:
ma1_functions.c:246:10: warning: variable ‘alphagrad’ set but not used
[-Wunused-but-set-variable]
ma1_functions.c:245:10: warning: variable ‘betagrad’ set but not used
[-Wunused-but-set-variable]
ma1_functions.c:244:10: warning: variable ‘rhograd’ set but not used
[-Wunused-but-set-variable]
gcc -m32 -std=gnu99 -shared -Wl,-z,relro -o bmod.so ar1_functions.o
ma1_functions.o -L/usr/lib/R/lib -lR
installing to /home/markleeds/research/R/Rlibs/library/bmod/libs
** R
** demo
** inst
** preparing package for lazy loading
** help
No man pages found in package 'bmod'
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
[1]
"LC_CTYPE=C;LC_NUMERIC=C;LC_TIME=C;LC_COLLATE=C;LC_MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER=C;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C"
[1] "LOADING MASS LIBRARY"
[1] "LOADING LATTICE LIBRARY"
* DONE (bmod)
:~/research/R/Rlibs/library>
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