R SIG Debian - Jun 2022 - Trying to install r-stan without using rocker

On 13 June 2022 at 14:25, Jesse McMullen-Crummey wrote:
| Hi All,
| 
| I?ve followed Dirk?s advice and am now starting from:
| 
| FROM eddelbuettel/r2u:22.04
| While installing rstan using
| RUN Rscript -e 'install.packages(c("rstan", "stringr",
"gtools", "tidyr"))'

(BTW I would actually use

   RUN install.r rstan stringr gtools tidyr

which is more idiomatic _for me_ using littler, but equivalent <wink> )

| I can now get my lambda function running,

Nice!

| but it throws an error when opening my Stan model, namely: 
| "C++ compiler not found on system.?
| 
| I would have thought that it would be part of this base image.

Indeed. That r2u image has g++-11.

So (r)stan may be configured differently / may have seen / expected a
different compiler?  I would check its docs. You should be able to square
that. 

Dirk

-- 
dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org

I'm not an expert, but I do use rstan on Ubuntu.

The install instructions here:

https://github.com/stan-dev/rstan/wiki/RStan-Getting-Started

include info on configuring the C++ Toolchain with a link for 
configuring on linux here:

 ?https://github.com/stan-dev/rstan/wiki/Configuring-C-Toolchain-for-Linux

in case this helps ...

Best,
Liz Tighe

On 6/13/2022 2:36 PM, Dirk Eddelbuettel wrote:
> On 13 June 2022 at 14:25, Jesse McMullen-Crummey wrote:
> | Hi All,
> |
> | I?ve followed Dirk?s advice and am now starting from:
> |
> | FROM eddelbuettel/r2u:22.04
> | While installing rstan using
> | RUN Rscript -e 'install.packages(c("rstan",
"stringr", "gtools", "tidyr"))'
>
> (BTW I would actually use
>
>     RUN install.r rstan stringr gtools tidyr
>
> which is more idiomatic _for me_ using littler, but equivalent <wink>
)
>
> | I can now get my lambda function running,
>
> Nice!
>
> | but it throws an error when opening my Stan model, namely:
> | "C++ compiler not found on system.?
> |
> | I would have thought that it would be part of this base image.
>
> Indeed. That r2u image has g++-11.
>
> So (r)stan may be configured differently / may have seen / expected a
> different compiler?  I would check its docs. You should be able to square
> that.
>
> Dirk
>