R SIG Debian - May 2022 - Installing R 4.1.2 doesn't work as it did a week ago

On 2 May 2022 at 13:52, Chad Young wrote:
| I have a docker file for installing R on Ubuntu 18.04, and as of last week
| it is failing. I think it seems to be related to the recent release of R
| 4.2.0. I want to install R 4.1.2, but when I use the below command and then
| check the R version, it comes out as 4.2.0. Do you know why this is
| happening?
| 
| RUN apt-get update \
|     && apt-get install -y gnupg2 software-properties-common \
|     && apt-key adv --keyserver keyserver.ubuntu.com --recv-keys
| E298A3A825C0D65DFD57CBB651716619E084DAB9 \
|     && add-apt-repository 'deb
https://cloud.r-project.org/bin/linux/ubuntu
| bionic-cran40/' \
|     && apt-get update \
|     && apt-get install -y \
|            r-base=4.1.2-* \
|            r-recommended=4.1.2-*
| 
| If I just install r-base-core=4.1.2-* it seems to install the correct
| version of R.

You were close. You need three lines at the end:

     && apt-get install -y \
            r-base=4.1.2-* \
            r-base-core=4.1.2-* \
            r-recommended=4.1.2-*

This has to do with a fact that such an imposed version does apparently _not_
get pushed through to the versions pulled in the by the packages you
constrained.  In other words, while 'r-base' gets fixed, the
'r-base-core' is
still "free" meaning you get the newest as `apt` tries to be helpful.

Dirk

-- 
dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org

Thanks for the quick response. When I try that, I get

 The following packages have unmet dependencies:
  r-recommended : Depends: r-cran-mass but it is not going to be installed
                  Depends: r-cran-class but it is not going to be installed

I added explicit installs for both of those (selecting what looked to be
the most appropriate version) and it seems to be working now.

Chad Young
Bioinformatics Scientist
TwinStrand Biosciences <https://twinstrandbio.com/>


On Mon, May 2, 2022 at 2:13 PM Dirk Eddelbuettel <edd at debian.org>
wrote:
>
> On 2 May 2022 at 13:52, Chad Young wrote:
> | I have a docker file for installing R on Ubuntu 18.04, and as of last
> week
> | it is failing. I think it seems to be related to the recent release of R
> | 4.2.0. I want to install R 4.1.2, but when I use the below command and
> then
> | check the R version, it comes out as 4.2.0. Do you know why this is
> | happening?
> |
> | RUN apt-get update \
> |     && apt-get install -y gnupg2 software-properties-common \
> |     && apt-key adv --keyserver keyserver.ubuntu.com --recv-keys
> | E298A3A825C0D65DFD57CBB651716619E084DAB9 \
> |     && add-apt-repository 'deb
> https://cloud.r-project.org/bin/linux/ubuntu
> | bionic-cran40/' \
> |     && apt-get update \
> |     && apt-get install -y \
> |            r-base=4.1.2-* \
> |            r-recommended=4.1.2-*
> |
> | If I just install r-base-core=4.1.2-* it seems to install the correct
> | version of R.
>
> You were close. You need three lines at the end:
>
>      && apt-get install -y \
>             r-base=4.1.2-* \
>             r-base-core=4.1.2-* \
>             r-recommended=4.1.2-*
>
> This has to do with a fact that such an imposed version does apparently
> _not_
> get pushed through to the versions pulled in the by the packages you
> constrained.  In other words, while 'r-base' gets fixed, the
'r-base-core'
> is
> still "free" meaning you get the newest as `apt` tries to be
helpful.
>
> Dirk
>
> --
> dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org
>
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