R SIG Debian - Jul 2019 - [R] Curl4, Quantmod, tseries and forecast

Hi Lorenzo,

On Sun, Jul 7, 2019 at 6:42 AM Lorenzo Isella <lorenzo.isella at
gmail.com> wrote:
>
> Dear All,
> I have just upgraded to Debian stable 10 and rebuilt most of the R
> packages.
> I use the R backported packages from here
>
> https://cran.r-project.org/bin/linux/debian/#debian-buster-testing
>
> for the core system.
> I encounter some issues when updating quantmod, tseries and forecast.
> For instance, see the following
>
> > install.packages("tseries")
>
> which finally fails with the following message
>
> ** byte-compile and prepare package for lazy loading
> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>   unable to load shared object
'/usr/local/lib/R/site-library/curl/libs/curl.so':
>   /usr/lib/x86_64-linux-gnu/libcurl.so.4: version `CURL_OPENSSL_3' not
found (required by /usr/local/lib/R/site-library/curl/libs/curl.so)
> Calls: <Anonymous> ... asNamespace -> loadNamespace ->
library.dynam -> dyn.load
> Execution halted
> ERROR: lazy loading failed for package ?tseries?
> * removing ?/usr/local/lib/R/site-library/tseries?
> * restoring previous ?/usr/local/lib/R/site-library/tseries?
>
> Now I have curl44 installed on my system because that is what Debian
> prrovides me with (and for the overwhelming majority of my packages it
> is not a problem).
> Please find below my sessionInfo().
> Any suggestion is appreciated.
The error is related to the installation/version of cURL on your
system, so I suggest sending this to R-SIG-Debian (cc'd).

Best,
Josh
> Cheers
>
> Lorenzo
>
>
> > sessionInfo()
> R version 3.6.0 (2019-04-26)
> Platform: x86_64-pc-linux-gnu (64-bit)
> Running under: Debian GNU/Linux 10 (buster)
>
> Matrix products: default
> BLAS:   /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.8.0
> LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.8.0
>
> locale:
>  [1] LC_CTYPE=en_GB.UTF-8       LC_NUMERIC=C
>  [3] LC_TIME=en_GB.UTF-8        LC_COLLATE=en_GB.UTF-8
>  [5] LC_MONETARY=en_GB.UTF-8    LC_MESSAGES=en_GB.UTF-8
>  [7] LC_PAPER=en_GB.UTF-8       LC_NAME=C
>  [9] LC_ADDRESS=C               LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> loaded via a namespace (and not attached):
> [1] compiler_3.6.0 tools_3.6.0
>
> ______________________________________________
> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.


-- 
Joshua Ulrich  |  about.me/joshuaulrich
FOSS Trading  |  www.fosstrading.com

Hi Ralf,
I tried the following
> install.packages("RCurl")

which went OK, but then same story when I tried to install tseries.
> sessionInfo()
R version 3.6.1 (2019-07-05)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Debian GNU/Linux 10 (buster)

Matrix products: default
BLAS:   /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.8.0
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.8.0

locale:
 [1] LC_CTYPE=en_GB.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_GB.UTF-8        LC_COLLATE=en_GB.UTF-8    
 [5] LC_MONETARY=en_GB.UTF-8    LC_MESSAGES=en_GB.UTF-8   
 [7] LC_PAPER=en_GB.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
[1] compiler_3.6.1 tools_3.6.1   

I run a standard debian stable 10 + the ranke debian backports  -- no
fancy stuff.
I do not believe I am the only one experiencing this.
Cheers

L.


On Sun, Jul 07, 2019 at 03:16:20PM +0200, Ralf Stubner
wrote:
>Hi Lorenzo
>
>Joshua Ulrich <josh.m.ulrich at gmail.com> schrieb am So. 7. Juli 2019
um
>14:16:
>
>> Hi Lorenzo,
>>
>> On Sun, Jul 7, 2019 at 6:42 AM Lorenzo Isella <lorenzo.isella at
gmail.com>
>> wrote:
>> > ** byte-compile and prepare package for lazy loading
>> > Error in dyn.load(file, DLLpath = DLLpath, ...) :
>> >   unable to load shared object
>> '/usr/local/lib/R/site-library/curl/libs/curl.so':
>> >   /usr/lib/x86_64-linux-gnu/libcurl.so.4: version
`CURL_OPENSSL_3' not
>> found (required by /usr/local/lib/R/site-library/curl/libs/curl.so)
>
>
>Did you reinstall the curl package? See also
>https://stackoverflow.com/a/50085192/8416610
>
>cheerio
>ralf