R SIG Debian - Apr 2017 - libcurl issue when manually installing R-3.3.3 on Debian 3.16.0-4-amd64

Dear Dirk,

Do you mean binaries for R-3.3.3?

I could not find any link on the page you mention
I downloaded R-3.3.3.tar.gz from https://cran.r-project.org/src/base/R-3/

then ran
./configure

I also tried
./configure --enable-R-shlib
based on a suggestion found in
http://jenzopr.github.io/bioinformatics/2016/05/03/r-wheezy-build.html

Many thanks,

Lucio

On 4 April 2017 at 17:17, Dirk Eddelbuettel <edd at debian.org<mailto:edd
at debian.org>> wrote:

On 4 April 2017 at 16:33, Lucio Marcello wrote:
| I am trying to upgrade R on Debian 3.16.0-4-amd64, as the default R version is
3.1.1 (2014). When I try to run ./configure on R-3.3.3, I get an error message
saying
|
| ...
| checking for curl-config... /usr/local/bin/curl-config
| checking libcurl version ... 7.53.1
| checking curl/curl.h usability... yes
| checking curl/curl.h presence... yes
| checking for curl/curl.h... yes
| checking if libcurl is version 7 and >= 7.28.0... yes
| checking if libcurl supports https... no
| configure: error: libcurl >= 7.28.0 library and headers are required with
support for https

I would install the binary from https://cran.r-project.org/bin/linux/debian/

Dirk

--
http://dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org<mailto:edd
at debian.org>

Inverness College UHI, a partner in the University of the Highlands and Islands
www.inverness.uhi.ac.uk Board of Management of Inverness College (known as
Inverness College UHI), Scottish Charity No SC021197.

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On 4 April 2017 at 17:45, Lucio Marcello wrote:
| Dear Dirk,
| 
| Do you mean binaries for R-3.3.3?
| 
| I could not find any link on the page you mention
| I downloaded R-3.3.3.tar.gz from https://cran.r-project.org/src/base/R-3/

The link I gave you is https://cran.r-project.org/bin/linux/debian

Please read what is on that page.
 
| then ran
| ./configure

We understand.

It is still "wrong" as we have a working prebuilt binary for you.

You to get it is described on that page.

Dirk

-- 
http://dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org

Dirk,

I appreciate that you were trying to help, but I would suggest you don't
answer a question if you find it irritating or think it is posed by someone who
hasn't taken the time to figure things out on his own... others might be
able to spare a bit more time and be more patient, however basic the question
is. There is a lot of material covered in the page and I found your "read
the page" + "we understand" comments dismissive.

With help from Johannes Ranke, I ran the following commands

sudo sh -c 'echo "deb
http://star-www.st-andrews.ac.uk/cran/bin/linux/debian jessie-cran3/"
>> /etc/apt/sources.list'
apt-key adv --keyserver keys.gnupg.net<http://keys.gnupg.net> --recv-key
6212B7B7931C4BB16280BA1306F90DE5381BA480

This did not work, possibly due to a firewall blocking port 1137 on my computer

I resorted to doing a custom installation of openssl and curl and R-3.3.3 was
installed successfully, the R ./configure message went from
checking if libcurl supports https... no
to
checking if libcurl supports https... yes

Here are the details

#remove curl
sudo apt-get purge --auto-remove curl

#remove openssl
sudo apt-get purge openssl

#install openssl from     http://www.openssl.org/source/openssl-1.1.0e.tar.gz
./config --prefix=/usr/local/openssl --openssldir=/usr/local/openssl
-Wl,-rpath=/usr/local/openssl/lib
make
make test
sudo make install
/usr/local/openssl/bin$ openssl version
    OpenSSL 1.1.0e  16 Feb 2017
    [OpenSSL commands were put together / modified from
   
https://geeksww.com/tutorials/libraries/openssl/installation/installing_openssl_on_ubuntu_linux.php
    https://wiki.openssl.org/index.php/Compilation_and_Installation
    https://github.com/openssl/openssl/issues/1740
    as curl's installation failed without -Wl,-rpath=/usr/local/openssl/lib
]


#install curl (curl-7.53.1 from https://curl.haxx.se/download.html)
./configure --with-ssl=/usr/local/openssl
make
sudo make install

#install R
R-3.3.3 from https://cran.r-project.org/src/base/R-3/
./configure
make
make check
make install


All the best,

Lucio


On 4 April 2017 at 18:36, Dirk Eddelbuettel <edd at debian.org<mailto:edd
at debian.org>> wrote:

On 4 April 2017 at 17:45, Lucio Marcello wrote:
| Dear Dirk,
|
| Do you mean binaries for R-3.3.3?
|
| I could not find any link on the page you mention
| I downloaded R-3.3.3.tar.gz from https://cran.r-project.org/src/base/R-3/

The link I gave you is https://cran.r-project.org/bin/linux/debian

Please read what is on that page.

| then ran
| ./configure

We understand.

It is still "wrong" as we have a working prebuilt binary for you.

You to get it is described on that page.

Dirk

--
http://dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org<mailto:edd
at debian.org>

Inverness College UHI, a partner in the University of the Highlands and Islands
www.inverness.uhi.ac.uk Board of Management of Inverness College (known as
Inverness College UHI), Scottish Charity No SC021197.

	[[alternative HTML version deleted]]