thr3ads.net - R help - [R] Fails to install Rfast package [Sep 2023]

If this information is useful, please help other people find it:
Share via:

Christofer Bogaso

2023-Sep-02 16:53 UTC

[R] Fails to install Rfast package

Hi,

I was trying to install Rfast package in iMac (OS HIGH SIERRA) from
source. However the installation fails with below message.

Rfast is an essential package for various other packages in R

Could you please help how to resolve this error?

Thankss for your help
> install.packages("/Volumes/WDStorage/NAS
Download/Rfast_2.0.8.tar.gz", repos = NULL)
* installing *source* package ?Rfast? ...

** package ?Rfast? successfully unpacked and MD5 sums checked

** using staged installation

** libs

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c Diag.cpp -o Diag.o

In file included from Diag.cpp:4:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c Norm.cpp -o Norm.o

In file included from Norm.cpp:3:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c Rank.cpp -o Rank.o

In file included from Rank.cpp:4:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c Sort.cpp -o Sort.o

In file included from Sort.cpp:3:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c Table.cpp -o Table.o

In file included from Table.cpp:5:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c add_to_namespace.cpp -o
add_to_namespace.o

In file included from add_to_namespace.cpp:3:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c apply_condition.cpp -o
apply_condition.o

In file included from apply_condition.cpp:4:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c as_integer.cpp -o
as_integer.o

In file included from as_integer.cpp:4:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c binarysearch.cpp -o
binarysearch.o

In file included from binarysearch.cpp:3:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c bincomb.cpp -o
bincomb.o

In file included from bincomb.cpp:4:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c calc_qpois_regs.cpp -o
calc_qpois_regs.o

In file included from calc_qpois_regs.cpp:3:

In file included from ./calc_qpois_regs.h:4:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c check.cpp -o check.o

In file included from check.cpp:3:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c cholesky.cpp -o
cholesky.o

In file included from cholesky.cpp:3:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c col_row_utilities.cpp
-o col_row_utilities.o

In file included from col_row_utilities.cpp:4:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c col_row_utilities_p.cpp
-o col_row_utilities_p.o

In file included from col_row_utilities_p.cpp:4:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c col_statistical.cpp -o
col_statistical.o

In file included from col_statistical.cpp:3:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c colrint_mle.cpp -o
colrint_mle.o

In file included from colrint_mle.cpp:3:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c colweibull_mle.cpp -o
colweibull_mle.o

In file included from colweibull_mle.cpp:3:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c cts.cpp -o cts.o

In file included from cts.cpp:4:

In file included from ./cts.h:9:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c cts_rf.cpp -o cts_rf.o

In file included from cts_rf.cpp:1:

In file included from ./cts_rf.h:5:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

cts_rf.cpp:786:18: warning: variable 'itters' set but not used
[-Wunused-but-set-variable]

  unsigned int j,itters=0;

                 ^

2 warnings generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c design_matrix.cpp -o
design_matrix.o

In file included from design_matrix.cpp:3:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c dir_knn.cpp -o
dir_knn.o

In file included from dir_knn.cpp:3:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c diri_nr_type2.cpp -o
diri_nr_type2.o

In file included from diri_nr_type2.cpp:3:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c dista.cpp -o dista.o

In file included from dista.cpp:3:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c dists.cpp -o dists.o

In file included from dists.cpp:4:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c dists_vec.cpp -o
dists_vec.o

In file included from dists_vec.cpp:4:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c each.cpp -o each.o

In file included from each.cpp:1:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c eigs_sym_c.cpp -o
eigs_sym_c.o

In file included from eigs_sym_c.cpp:1:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c energy.cpp -o energy.o

In file included from energy.cpp:5:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c floyd_john.cpp -o
floyd_john.o

In file included from floyd_john.cpp:3:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c frame_to_matrix.cpp -o
frame_to_matrix.o

In file included from frame_to_matrix.cpp:3:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c g2_export.cpp -o
g2_export.o

In file included from g2_export.cpp:4:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c g2_helpers.cpp -o
g2_helpers.o

In file included from g2_helpers.cpp:2:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c g2t.cpp -o g2t.o

In file included from g2t.cpp:5:

In file included from ./g2t.h:18:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp.h:27:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c gamma.cpp -o gamma.o

In file included from gamma.cpp:3:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c gaussian_nb.cpp -o
gaussian_nb.o

In file included from gaussian_nb.cpp:6:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c geom_regs.cpp -o
geom_regs.o

In file included from geom_regs.cpp:3:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c glm.cpp -o glm.o

In file included from glm.cpp:3:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c group.cpp -o group.o

In file included from group.cpp:2:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c hash.cpp -o hash.o

In file included from hash.cpp:2:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang -mmacosx-version-min=10.13
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c init.c -o init.o

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c is.cpp -o is.o

In file included from is.cpp:4:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c k_nn.cpp -o k_nn.o

In file included from k_nn.cpp:4:

In file included from ./k_nn.h:8:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c logistic_only.cpp -o
logistic_only.o

In file included from logistic_only.cpp:3:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c lower_upper_tri.cpp -o
lower_upper_tri.o

In file included from lower_upper_tri.cpp:4:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c maha.cpp -o maha.o

In file included from maha.cpp:26:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c maha_ex.cpp -o
maha_ex.o

In file included from maha_ex.cpp:2:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c matrices.cpp -o
matrices.o

In file included from matrices.cpp:3:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c mn.cpp -o mn.o

In file included from mn.cpp:3:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c multinom_regs.cpp -o
multinom_regs.o

In file included from multinom_regs.cpp:3:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c my_k_sorted_array.cpp
-o my_k_sorted_array.o

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c normlog_reg.cpp -o
normlog_reg.o

In file included from normlog_reg.cpp:3:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c normlog_regs.cpp -o
normlog_regs.o

In file included from normlog_regs.cpp:3:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c odds_helper.cpp -o
odds_helper.o

In file included from odds_helper.cpp:2:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c partial_sort.cpp -o
partial_sort.o

In file included from partial_sort.cpp:3:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c pc_skel.cpp -o
pc_skel.o

In file included from pc_skel.cpp:4:

In file included from ./pc_skel.h:7:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c permutation.cpp -o
permutation.o

In file included from permutation.cpp:3:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c positive_negative.cpp
-o positive_negative.o

In file included from positive_negative.cpp:6:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c prop.cpp -o prop.o

In file included from prop.cpp:1:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c qpois.cpp -o qpois.o

In file included from qpois.cpp:1:

In file included from ./calc_qpois_regs.h:4:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c rbing.cpp -o rbing.o

In file included from rbing.cpp:4:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c read.cpp -o read.o

In file included from read.cpp:3:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c reg_lib.cpp -o
reg_lib.o

In file included from reg_lib.cpp:3:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c rep.cpp -o rep.o

In file included from rep.cpp:6:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c rint.cpp -o rint.o

In file included from rint.cpp:3:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c rmdp.cpp -o rmdp.o

In file included from rmdp.cpp:3:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c rvmf_h.cpp -o rvmf_h.o

In file included from rvmf_h.cpp:4:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c sf.cpp -o sf.o

In file included from sf.cpp:1:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c sort_mat.cpp -o
sort_mat.o

In file included from sort_mat.cpp:3:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c sort_unique.cpp -o
sort_unique.o

In file included from sort_unique.cpp:3:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

sort_unique.cpp:165:33: warning: unused variable 'F' [-Wunused-variable]

    vector<int>::iterator pp,nn,F;

                                ^

2 warnings generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c spat_med.cpp -o
spat_med.o

In file included from spat_med.cpp:3:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c spml.cpp -o spml.o

In file included from spml.cpp:3:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c sw_regs.cpp -o
sw_regs.o

In file included from sw_regs.cpp:4:

In file included from ./sw_regs.h:4:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c system_files.cpp -o
system_files.o

In file included from system_files.cpp:3:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c topological_sort.cpp -o
topological_sort.o

In file included from topological_sort.cpp:4:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c total_dista.cpp -o
total_dista.o

In file included from total_dista.cpp:2:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c total_dists.cpp -o
total_dists.o

In file included from total_dists.cpp:5:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c utilities.cpp -o
utilities.o

In file included from utilities.cpp:3:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c varcomps_mle.cpp -o
varcomps_mle.o

In file included from varcomps_mle.cpp:3:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c vecdist.cpp -o
vecdist.o

In file included from vecdist.cpp:6:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c weib_reg.cpp -o
weib_reg.o

In file included from weib_reg.cpp:3:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include'
-I/usr/local/include   -fPIC  -Wall -g -O2  -c weibull_mle.cpp -o
weibull_mle.o

In file included from weibull_mle.cpp:3:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo.h:29:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:

In file included from
/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/RcppCommon.h:168:

/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include/Rcpp/internal/r_coerce.h:255:7:
warning: 'sprintf' is deprecated: This function is provided

      for compatibility reasons only. Due to security concerns
inherent in the design of sprintf(3), it is highly recommended that
you use snprintf(3) instead. [-Wdeprecated-declarations]

    ::sprintf(buff, "%02x", from);

      ^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:188:1:
note: 'sprintf' has been explicitly marked deprecated here

__deprecated_msg("This function is provided for compatibility reasons
only.  Due to security concerns inherent in the design of sprintf(3),
it is highly recommended that you use snp...

^

/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:215:48:
note: expanded from macro '__deprecated_msg'

        #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))

                                                      ^

1 warning generated.

clang++ -mmacosx-version-min=10.13 -std=gnu++17 -dynamiclib
-Wl,-headerpad_max_install_names -undefined dynamic_lookup
-single_module -multiply_defined suppress
-L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o
Rfast.so Diag.o Norm.o Rank.o Sort.o Table.o add_to_namespace.o
apply_condition.o as_integer.o binarysearch.o bincomb.o
calc_qpois_regs.o check.o cholesky.o col_row_utilities.o
col_row_utilities_p.o col_statistical.o colrint_mle.o colweibull_mle.o
cts.o cts_rf.o design_matrix.o dir_knn.o diri_nr_type2.o dista.o
dists.o dists_vec.o each.o eigs_sym_c.o energy.o floyd_john.o
frame_to_matrix.o g2_export.o g2_helpers.o g2t.o gamma.o gaussian_nb.o
geom_regs.o glm.o group.o hash.o init.o is.o k_nn.o logistic_only.o
lower_upper_tri.o maha.o maha_ex.o matrices.o mn.o multinom_regs.o
my_k_sorted_array.o normlog_reg.o normlog_regs.o odds_helper.o
partial_sort.o pc_skel.o permutation.o positive_negative.o prop.o
qpois.o rbing.o read.o reg_lib.o rep.o rint.o rmdp.o rvmf_h.o sf.o
sort_mat.o sort_unique.o spat_med.o spml.o sw_regs.o system_files.o
topological_sort.o total_dista.o total_dists.o utilities.o
varcomps_mle.o vecdist.o weib_reg.o weibull_mle.o
-L/Library/Frameworks/R.framework/Resources/lib -lRlapack
-L/Library/Frameworks/R.framework/Resources/lib -lRblas
-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0
-L/usr/local/gfortran/lib -lgfortran -lquadmath -lm
-F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework
-Wl,CoreFoundation

ld: warning: directory not found for option
'-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'

ld: warning: directory not found for option '-L/usr/local/gfortran/lib'

ld: library not found for -lgfortran

clang: error: linker command failed with exit code 1 (use -v to see invocation)

make: *** [Rfast.so] Error 1

ERROR: compilation failed for package ?Rfast?

* removing
?/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rfast?

Warning message:

In install.packages("/Volumes/WDStorage/NAS
Download/Rfast_2.0.8.tar.gz",  :

  installation of package ?/Volumes/WDStorage/NAS
Download/Rfast_2.0.8.tar.gz? had non-zero exit status

Ivan Krylov

2023-Sep-02 17:06 UTC

head link

[R] Fails to install Rfast package

? Sat, 2 Sep 2023 22:23:51 +0530
Christofer Bogaso <bogaso.christofer at gmail.com> ?????:
> ld: warning: directory not found for option
> '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0'
> 
> ld: warning: directory not found for option
> '-L/usr/local/gfortran/lib'
> 
> ld: library not found for -lgfortran
Sounds like you need to install gfortran:
https://mac.r-project.org/tools/

If that doesn't help, consider asking at r-sig-mac at r-project.org, a
"special interest group" for everything related to R on macOS.

-- 
Best regards,
Ivan

Maybe Matching Threads

Search for more maybe matching threads

R help - Sep 2023 - Fails to install Rfast package

[R] Fails to install Rfast package

[R] Fails to install Rfast package

Maybe Matching Threads