1) The Posting Guide warns you to use a search engine to familiarize yourself
with the obvious answers before posting. "fastq file r" brought up
quite a bunch of promising results. If those results are not useful, do expand
on why they weren't when asking anyone for further help.
2) The Posting Guide also warns you that these mailing lists are plain text only
... you sent formatted text and automated systems including your own email
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information the sender thinks we will see... so figure out how to tell your
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dark about what you think is obvious.
3) There is usually more than one way to import files of any type... and the
choice you make could be poorly matched to the size of your data or the type of
analysis. Do ask this "best practice" question in the Bioconductor
help area [1] where you can find many more experts in this specialized use of R
than here. Try to be a bit more complete in your question so they can offer
informed answers relevant to the size and scope of your analysis.
[1] https://bioconductor.org/help/
On August 20, 2022 2:13:20 PM PDT, Anas Jamshed <anasjamshed1994 at
gmail.com> wrote:>I've 80 FASTQ files ( 40F and 40R) for C57BL6 mice microbiome sequencing
in
>80 different folders and all are paired-end. How can I upload all of them
>in R for dada2 analysis?
>
> [[alternative HTML version deleted]]
>
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Sent from my phone. Please excuse my brevity.