On 7/12/22 23:26, David Winsemius wrote:> I think the restriction is not specific to `c` but rather is a limitation
on the length of expressions. My foggy memory is that the limit is in the
450-500 character vicinity. Pretty sure it?s been discussed here in the past.
One way to get around this limitation is to create a .r file and source
the material. I just tested with your code and it succeeded.
--
David.
>
> ?
> David.
>
> Sent from my iPhone
>
>> On Jul 12, 2022, at 11:13 PM, core_contingency <ccontingency at
gmail.com> wrote:
>>
>> ?To Whom it May Concern,
>>
>> I am creating a vector with the base R function "c", with
many arguments as shown below:
>>
>> $ R
>> > MES = c("A2M", "ABRACL",
"ACADVL", "ACAP2", "ACTA2", "ACTN1",
"ADAM19", "ADAM9", "ADAMTS5", "ADGRE5",
"ADGRG6", "AEBP1", "AJUBA", "ALDH1A3",
"AMMECR1", "ANTXR1", "ANXA1", "ANXA2",
"ANXA5", "ANXA6", "APOE", "APP",
"ARHGAP1", "ARHGEF40", "ARL1", "ARL4A",
"ARMCX2", "ARPC1B", "ASPH", "ATP10D",
"ATP1B1", "ATP2B1", "ATP2B4",
"ATP6V0E1", "ATP8B2", "ATXN1", "B2M",
"BAG3", "BGN", "BMP5", "BNC2",
"BOC", "BTN3A2", "C1orf198", "C1orf54",
"C4orf32", "C6orf120", "CALD1", "CALU",
"CAPN2", "CAPN6", "CBFB", "CBLB",
"CCDC80", "CD164", "CD44", "CD59",
"CD63", "CDH11", "CETN2", "CFH",
"CFI", "CILP", "CKAP4", "CLIC4",
"CMTM3", "CMTM6", "CNN3", "COL11A1",
"COL12A1", "COL1A1", "COL27A1",
"COL3A1", "COL4A1", "COL4A2", "COL5A1",
"COL5A2", "COL6A1", "COL6A2", "COL6A3",
"COPA", "CPED1", "CPS1", "CRABP2",
"CREB3L2", "CREG1", "CRELD2",
"CRISPLD1", "CRTAP", "CSRP1", "CTDSP2",
"CTNNA1", "CTSB", "CTSC", "CTSO",
"CXCL12", "CYBRD1", "CYFIP1", "CYP26A1",
"CYR61", "DCAF6", "DDOST", "DDR2",
"DESI2", "DKK3", "DLC1", "DLX1",
"DLX2", "DMD", "DNAJC1", "DNAJC10",
"DNAJC3", "DNM3OS", "DPY19L1", "DSE",
"DUSP14", "DUSP5", "DUSP6", "EDEM1",
"EDNRA", "EFEMP2", "EGFR", "EGR1",
"EGR3", "EHD2", "ELAVL1", "ELF1",
"ELK3", "ELK4", "EMILIN1", "EMP1",
"ENAH", "EPHA3", "EPS8", "ERBIN",
"ERLIN1", "ERRFI1", "ETS1", "EVA1A",
"EXT1", "EXTL2", "F2R", "F2RL2",
"FAM102B", "FAM114A1", "FAM120A",
"FAM129A", "FAM3C", "FAM43A", "FAM46A",
"FAT1", "FBN1", "FBN2", "FGFR1",
"FIBIN", "FILIP1L", "FKBP14", "FLNA",
"FLRT2", "FMOD", "FN1", "FNDC3B",
"FSTL1", "FUCA2", "FZD1", "FZD2",
"FZD7", "GABRR1", "GALNT10", "GAS1",
"GAS2", "GDF15", "GJA1", "GNAI1",
"GNG12", "GNS", "GORAB", "GPC6",
"GPR137B", "GPX8", "GRN", "GSN",
"HES1", "HEXB", "HIBADH", "HIPK3",
"HIST1H2AC", "HIST1H2BK", "HLA-A",
"HLA-B", "HLA-C", "HLA-F", "HLX",
"HNMT", "HOMER1", "HS3ST3A1", "HSP90B1",
"HSPA5", "HSPB1", "HTRA1", "HYOU1",
"ID1", "ID3", "IFI16", "IFITM2",
"IFITM3", "IGF2R", "IGFBP5", "IGFBP6",
"IL13RA1", "IL6ST", "INSIG1", "IQGAP2",
"ITGA10", "ITGA4", "ITGAV", "ITGB1",
"ITM2B", "ITM2C", "ITPR1", "ITPRIPL2",
"JAK1", "JAM3", "KANK2", "KCNK2",
"KCTD12", "KDELC2", "KDELR2", "KDELR3",
"KDM5B", "KIAA1462", "KIF13A", "KIRREL",
"KLF10", "KLF4", "KLF6", "L3HYPDH",
"LAMB1", "LAMC1", "LAMP1", "LAPTM4A",
"LASP1", "LATS2", "LEPROT", "LGALS1",
"LHFP", "LHX8", "LIFR", "LIPA",
"LITAF", "LIX1L", "LMAN1", "LMNA",
"LOXL2", "LPP", "LRP10", "LRRC17",
"LRRC8C", "LTBP1", "LUZP1", "MAGT1",
"MAML2", "MAN2A1", "MANF", "MBD2",
"MBNL1", "MBTPS1", "MEOX1", "MEOX2",
"MEST", "MGAT2", "MGP", "MGST1",
"MICAL2", "MMP2", "MOB1A", "MRC2",
"MXRA5", "MYADM", "MYDGF", "MYL12A",
"MYL12B", "MYLIP", "NANS", "NBR1",
"NEK7", "NES", "NFIA", "NFIC",
"NID1", "NID2", "NOTCH2", "NOTCH2NL",
"NPC2", "NPTN", "NQO1", "NR3C1",
"NRP1", "OGFRL1", "OLFML2A", "OLFML2B",
"OLFML3", "OSTC", "P4HA1", "PALLD",
"PAPSS2", "PCDH18", "PCOLCE2", "PCSK5",
"PDE3A", "PDE7B", "PDGFC", "PDIA3",
"PDIA4", "PDIA6", "PDLIM1", "PEA15",
"PEAK1", "PHLDA3", "PHLDB2", "PHTF2",
"PIAS3", "PLAGL1", "PLEKHA2", "PLEKHH2",
"PLK2", "PLOD2", "PLOD3", "PLPP1",
"PLS3", "PLSCR1", "PLSCR4", "PLXDC2",
"POLR2L", "PON2", "POSTN", "PPIB",
"PPIC", "PPT1", "PRCP", "PRDM6",
"PRDX4", "PRDX6", "PROM1", "PRRX1",
"PTBP1", "PTGER4", "PTGFRN", "PTN",
"PTPN14", "PTPRG", "PTPRK", "PTRF",
"PXDC1", "PXDN", "PYGL", "QKI",
"QSOX1", "RAB13", "RAB29", "RAB31",
"RAP1A", "RAP1B", "RBMS1", "RCN1",
"RECK", "REST", "RGL1", "RGS10",
"RGS3", "RHOC", "RHOJ", "RIN2",
"RIT1", "RNFT1", "RNH1", "ROBO1",
"ROR1", "RRBP1", "S1PR3", "SASH1",
"SCPEP1", "SCRG1", "SDC2", "SDC4",
"SDCBP", "SDF4", "SEC14L1", "SEL1L3",
"SEMA3C", "SEMA3F", "SEPT10",
"SERPINE2", "SERPINH1", "SFT2D1",
"SFT2D2", "SGK1", "SH3BGRL", "SHC1",
"SHROOM3", "SIX1", "SIX4", "SKIL",
"SLC16A4", "SLC30A1", "SLC30A7",
"SLC35F5", "SLC38A2", "SLC38A6",
"SLC39A14", "SMAD3", "SNAI2", "SNAP23",
"SOSTDC1", "SOX9", "SPARC", "SPARCL1",
"SPATA20", "SPCS3", "SPRED1", "SPRY1",
"SPRY4", "SPRY4-IT1", "SQSTM1", "SRPX",
"SSBP4", "SSR1", "SSR3", "STAT1",
"STAT3", "STEAP1", "STK38L", "SUCLG2",
"SURF4", "SVIL", "SYDE1", "SYNJ2",
"SYPL1", "TCF7L2", "TFE3", "TFPI",
"TGFB1I1", "TGFBR2", "THBS1", "TIMP1",
"TJP1")
>> +
>>
>> For some reason, the R console does not display a ">"
symbol, indicating that it has completed the function, but displays a
"+" symbol instead, which indicates that the function is still waiting
for more input. However, I believe that my syntax is correct. If I shorten my
command by a few characters by removing the last entry, "TJP1":
>>
>> $ R
>> > MES = c("A2M", "ABRACL",
"ACADVL", "ACAP2", "ACTA2", "ACTN1",
"ADAM19", "ADAM9", "ADAMTS5", "ADGRE5",
"ADGRG6", "AEBP1", "AJUBA", "ALDH1A3",
"AMMECR1", "ANTXR1", "ANXA1", "ANXA2",
"ANXA5", "ANXA6", "APOE", "APP",
"ARHGAP1", "ARHGEF40", "ARL1", "ARL4A",
"ARMCX2", "ARPC1B", "ASPH", "ATP10D",
"ATP1B1", "ATP2B1", "ATP2B4",
"ATP6V0E1", "ATP8B2", "ATXN1", "B2M",
"BAG3", "BGN", "BMP5", "BNC2",
"BOC", "BTN3A2", "C1orf198", "C1orf54",
"C4orf32", "C6orf120", "CALD1", "CALU",
"CAPN2", "CAPN6", "CBFB", "CBLB",
"CCDC80", "CD164", "CD44", "CD59",
"CD63", "CDH11", "CETN2", "CFH",
"CFI", "CILP", "CKAP4", "CLIC4",
"CMTM3", "CMTM6", "CNN3", "COL11A1",
"COL12A1", "COL1A1", "COL27A1",
"COL3A1", "COL4A1", "COL4A2", "COL5A1",
"COL5A2", "COL6A1", "COL6A2", "COL6A3",
"COPA", "CPED1", "CPS1", "CRABP2",
"CREB3L2", "CREG1", "CRELD2",
"CRISPLD1", "CRTAP", "CSRP1", "CTDSP2",
"CTNNA1", "CTSB", "CTSC", "CTSO",
"CXCL12", "CYBRD1", "CYFIP1", "CYP26A1",
"CYR61", "DCAF6", "DDOST", "DDR2",
"DESI2", "DKK3", "DLC1", "DLX1",
"DLX2", "DMD", "DNAJC1", "DNAJC10",
"DNAJC3", "DNM3OS", "DPY19L1", "DSE",
"DUSP14", "DUSP5", "DUSP6", "EDEM1",
"EDNRA", "EFEMP2", "EGFR", "EGR1",
"EGR3", "EHD2", "ELAVL1", "ELF1",
"ELK3", "ELK4", "EMILIN1", "EMP1",
"ENAH", "EPHA3", "EPS8", "ERBIN",
"ERLIN1", "ERRFI1", "ETS1", "EVA1A",
"EXT1", "EXTL2", "F2R", "F2RL2",
"FAM102B", "FAM114A1", "FAM120A",
"FAM129A", "FAM3C", "FAM43A", "FAM46A",
"FAT1", "FBN1", "FBN2", "FGFR1",
"FIBIN", "FILIP1L", "FKBP14", "FLNA",
"FLRT2", "FMOD", "FN1", "FNDC3B",
"FSTL1", "FUCA2", "FZD1", "FZD2",
"FZD7", "GABRR1", "GALNT10", "GAS1",
"GAS2", "GDF15", "GJA1", "GNAI1",
"GNG12", "GNS", "GORAB", "GPC6",
"GPR137B", "GPX8", "GRN", "GSN",
"HES1", "HEXB", "HIBADH", "HIPK3",
"HIST1H2AC", "HIST1H2BK", "HLA-A",
"HLA-B", "HLA-C", "HLA-F", "HLX",
"HNMT", "HOMER1", "HS3ST3A1", "HSP90B1",
"HSPA5", "HSPB1", "HTRA1", "HYOU1",
"ID1", "ID3", "IFI16", "IFITM2",
"IFITM3", "IGF2R", "IGFBP5", "IGFBP6",
"IL13RA1", "IL6ST", "INSIG1", "IQGAP2",
"ITGA10", "ITGA4", "ITGAV", "ITGB1",
"ITM2B", "ITM2C", "ITPR1", "ITPRIPL2",
"JAK1", "JAM3", "KANK2", "KCNK2",
"KCTD12", "KDELC2", "KDELR2", "KDELR3",
"KDM5B", "KIAA1462", "KIF13A", "KIRREL",
"KLF10", "KLF4", "KLF6", "L3HYPDH",
"LAMB1", "LAMC1", "LAMP1", "LAPTM4A",
"LASP1", "LATS2", "LEPROT", "LGALS1",
"LHFP", "LHX8", "LIFR", "LIPA",
"LITAF", "LIX1L", "LMAN1", "LMNA",
"LOXL2", "LPP", "LRP10", "LRRC17",
"LRRC8C", "LTBP1", "LUZP1", "MAGT1",
"MAML2", "MAN2A1", "MANF", "MBD2",
"MBNL1", "MBTPS1", "MEOX1", "MEOX2",
"MEST", "MGAT2", "MGP", "MGST1",
"MICAL2", "MMP2", "MOB1A", "MRC2",
"MXRA5", "MYADM", "MYDGF", "MYL12A",
"MYL12B", "MYLIP", "NANS", "NBR1",
"NEK7", "NES", "NFIA", "NFIC",
"NID1", "NID2", "NOTCH2", "NOTCH2NL",
"NPC2", "NPTN", "NQO1", "NR3C1",
"NRP1", "OGFRL1", "OLFML2A", "OLFML2B",
"OLFML3", "OSTC", "P4HA1", "PALLD",
"PAPSS2", "PCDH18", "PCOLCE2", "PCSK5",
"PDE3A", "PDE7B", "PDGFC", "PDIA3",
"PDIA4", "PDIA6", "PDLIM1", "PEA15",
"PEAK1", "PHLDA3", "PHLDB2", "PHTF2",
"PIAS3", "PLAGL1", "PLEKHA2", "PLEKHH2",
"PLK2", "PLOD2", "PLOD3", "PLPP1",
"PLS3", "PLSCR1", "PLSCR4", "PLXDC2",
"POLR2L", "PON2", "POSTN", "PPIB",
"PPIC", "PPT1", "PRCP", "PRDM6",
"PRDX4", "PRDX6", "PROM1", "PRRX1",
"PTBP1", "PTGER4", "PTGFRN", "PTN",
"PTPN14", "PTPRG", "PTPRK", "PTRF",
"PXDC1", "PXDN", "PYGL", "QKI",
"QSOX1", "RAB13", "RAB29", "RAB31",
"RAP1A", "RAP1B", "RBMS1", "RCN1",
"RECK", "REST", "RGL1", "RGS10",
"RGS3", "RHOC", "RHOJ", "RIN2",
"RIT1", "RNFT1", "RNH1", "ROBO1",
"ROR1", "RRBP1", "S1PR3", "SASH1",
"SCPEP1", "SCRG1", "SDC2", "SDC4",
"SDCBP", "SDF4", "SEC14L1", "SEL1L3",
"SEMA3C", "SEMA3F", "SEPT10",
"SERPINE2", "SERPINH1", "SFT2D1",
"SFT2D2", "SGK1", "SH3BGRL", "SHC1",
"SHROOM3", "SIX1", "SIX4", "SKIL",
"SLC16A4", "SLC30A1", "SLC30A7",
"SLC35F5", "SLC38A2", "SLC38A6",
"SLC39A14", "SMAD3", "SNAI2", "SNAP23",
"SOSTDC1", "SOX9", "SPARC", "SPARCL1",
"SPATA20", "SPCS3", "SPRED1", "SPRY1",
"SPRY4", "SPRY4-IT1", "SQSTM1", "SRPX",
"SSBP4", "SSR1", "SSR3", "STAT1",
"STAT3", "STEAP1", "STK38L", "SUCLG2",
"SURF4", "SVIL", "SYDE1", "SYNJ2",
"SYPL1", "TCF7L2", "TFE3", "TFPI",
"TGFB1I1", "TGFBR2", "THBS1", "TIMP1")
>> >
>>
>> The function now works, and returns a ">" symbol,
indicating that the function completed successfully. The ls() function proves
it:
>>
>> $ R
>> > ls()
>> [1] "MES"
>>
>> Is this a bug in the base R "c" function? It seems like the
"c" function can only accept so many characters before it fails.
>>
>> Thank you for your time,
>> core_contingency
>>
>> ______________________________________________
>> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
>> https://stat.ethz.ch/mailman/listinfo/r-help
>> PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
>> and provide commented, minimal, self-contained, reproducible code.
> ______________________________________________
> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.