Anas Jamshed
2022-Jan-04 01:06 UTC
[R] Connect R with Ensemble Rest API to fetch variations
I have a list of 422 genes in excel file .I want to know if its possible to get snps details of these gene by using Ensemble Rest API or biomart? [[alternative HTML version deleted]]
Bert Gunter
2022-Jan-04 01:22 UTC
[R] Connect R with Ensemble Rest API to fetch variations
Your query is completely off topic here. I suggest you try posting at: https://www.bioconductor.org/help/ instead. I also suggest that you read and follow their posting guide before doing so. Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Mon, Jan 3, 2022 at 5:08 PM Anas Jamshed <anasjamshed1994 at gmail.com> wrote:> I have a list of 422 genes in excel file .I want to know if its possible to > get snps details of these gene by using Ensemble Rest API or biomart? > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >[[alternative HTML version deleted]]
William Michels
2022-Jan-04 03:16 UTC
[R] Connect R with Ensemble Rest API to fetch variations
Hello Anas, You can find courses and/or training materials on the Ensembl/EBI websites, including R code: https://www.ebi.ac.uk/training/online/courses/ensembl-rest-api/ http://training.ensembl.org/ You can also click on individual 'Ensembl REST API Endpoints', and find sample R code there: http://rest.ensembl.org/ Good luck, Bill. W. Michels, Ph.D. On Mon, Jan 3, 2022 at 5:08 PM Anas Jamshed <anasjamshed1994 at gmail.com> wrote:> > I have a list of 422 genes in excel file .I want to know if its possible to > get snps details of these gene by using Ensemble Rest API or biomart? > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code.