Martin R. Smith
2022-Jan-13 13:37 UTC
[R] [R-pkgs] Package "Rogue": Detect wildcard taxa in sets of phylogenetic trees
Dear R users,
Package "Rogue" has been published on CRAN:
https://CRAN.R-project.org/package=Rogue.
"Rogue" improves phylogenetic analysis by detecting wildcard taxa
whose
inconsistent position reduces split support and resolution in consensus
trees. It implements an effective new information-theoretic approach
(Smith 2022, https://doi.org/10.1093/sysbio/syab099), and provides an R
interface to the established "RogueNaRok" C library (Aberer et al.
2013,
https://doi.org/10.1093/sysbio/sys078).
A vignette demonstrating use on Bayesian posterior tree sets can be found
at https://cran.r-project.org/web/packages/Rogue/vignettes/Bayesian.html.
Questions and bug reports are welcome at https://github.com/ms609/Rogue.
Regards,
Martin Smith
--
*Dr. Martin R. Smith*
Associate Professor in Palaeontology
Durham University
Department of Earth Sciences
Mountjoy Site, South Road, Durham, DH1 3LE United Kingdom
*M*: +44 (0)774 353 7510
*E*: martin.smith at durham.ac.uk
smithlabdurham.github.io
twitter.com/PalaeoSmith
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