R help - Dec 2020 - A general question about targeted sequencing data analysis

Dear all,

One of our PIs has a targeted sequencing dataset generated a while ago.  He is
interested in finding out VAF of a group of genes.  This is the first dataset of
this types we have.  I would be appreciative for any suggestions on pipelines
for analyzing this type of data.

Thanks

Anna

	[[alternative HTML version deleted]]

My suggestion would be to ask this question in a forum devoted to that topic,
such as the Bioconductor forum [1].

[1] https://www.bioconductor.org/help/support/

On December 3, 2020 11:25:24 AM PST, "Li, Aiguo (NIH/NCI) [E] via
R-help" <r-help at r-project.org> wrote:
>Dear all,
>
>One of our PIs has a targeted sequencing dataset generated a while ago.
>He is interested in finding out VAF of a group of genes.  This is the
>first dataset of this types we have.  I would be appreciative for any
>suggestions on pipelines for analyzing this type of data.
>
>Thanks
>
>Anna
>
>	[[alternative HTML version deleted]]
>
>______________________________________________
>R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
>https://stat.ethz.ch/mailman/listinfo/r-help
>PLEASE do read the posting guide
>http://www.R-project.org/posting-guide.html
>and provide commented, minimal, self-contained, reproducible code.
-- 
Sent from my phone. Please excuse my brevity.