R help - Jun 2020 - to read data for GCalignR package

Dear R-help colleagues,

I am looking for a way to read my txt file into R such that it can pass the
check_input() function and be processed by in GCalignR.

The vignette mentioned to save data in txt format, with first row listing items,
2nd row listing RT and Area, third rows and afterwards concatenate multiple RT
and area from items listed in first row.

I did this but did not find an effective way to import this data. Tried
read.delim, scan, read individual and combine into a list. Saved to system.file
and read as the example data. None worked.

Any suggestions?

Thank you very much.

Hui

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I am not sure what they are doing but have a look at
https://rdrr.io/cran/GCalignR/man/read_peak_list.html




On Mon, 8 Jun 2020 at 17:38, Hui Liu <hliu at wavelifesci.com> wrote:
> Dear R-help colleagues,
>
> I am looking for a way to read my txt file into R such that it can pass
> the check_input() function and be processed by in GCalignR.
>
> The vignette mentioned to save data in txt format, with first row listing
> items, 2nd row listing RT and Area, third rows and afterwards concatenate
> multiple RT and area from items listed in first row.
>
> I did this but did not find an effective way to import this data. Tried
> read.delim, scan, read individual and combine into a list. Saved to
> system.file and read as the example data. None worked.
>
> Any suggestions?
>
> Thank you very much.
>
> Hui
>
> Wave Life Sciences Email Confidentiality Notice: This message, including
> any attachments, is for use by the intended recipient(s) and may be
> proprietary, confidential and/or privileged. If you are not the intended
> recipient(s), please destroy all copies of this message and any
> attachments. Any use, forwarding, copying, or printing of this message or
> portion thereof by anyone other than the intended recipient(s) is
> prohibited. This email neither constitutes an agreement to conduct
> transactions by electronic means nor creates any legally binding contract
> or enforceable obligation in the absence of a fully signed written
contract.
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>

-- 
John Kane
Kingston ON Canada

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