Yuan Chun Ding
2020-Jan-02 20:15 UTC
[R] R package for genetic analysis of VNTR (variable number of tandem repeats) genotype data
Hi R users, Does any one know a R package for genetic analysis of VNTR (variable number of tandem repeats) genotype data? For example, performing Hardy Weinberg equilibrium test, calculating heterozygosity and polymorphism information content etc. I am sorry if this question is not relevant to this R platform. I have searched for 3 hours. Thank you, Ding ---------------------------------------------------------------------- ------------------------------------------------------------ -SECURITY/CONFIDENTIALITY WARNING- This message and any attachments are intended solely for the individual or entity to which they are addressed. This communication may contain information that is privileged, confidential, or exempt from disclosure under applicable law (e.g., personal health information, research data, financial information). Because this e-mail has been sent without encryption, individuals other than the intended recipient may be able to view the information, forward it to others or tamper with the information without the knowledge or consent of the sender. If you are not the intended recipient, or the employee or person responsible for delivering the message to the intended recipient, any dissemination, distribution or copying of the communication is strictly prohibited. If you received the communication in error, please notify the sender immediately by replying to this message and deleting the message and any accompanying files from your system. If, due to the security risks, you do not wish to receive further communications via e-mail, please reply to this message and inform the sender that you do not wish to receive further e-mail from the sender. (LCP301) ------------------------------------------------------------ [[alternative HTML version deleted]]
Bert Gunter
2020-Jan-02 20:52 UTC
[R] R package for genetic analysis of VNTR (variable number of tandem repeats) genotype data
You may get a useful answer here, but you are much more likely to at the Bioconductor website that specializes in this sort of thing. https://bioconductor.org/help/ Cheers, Bert On Thu, Jan 2, 2020 at 12:16 PM Yuan Chun Ding <ycding at coh.org> wrote:> Hi R users, > Does any one know a R package for genetic analysis of VNTR (variable > number of tandem repeats) genotype data? For example, performing Hardy > Weinberg equilibrium test, calculating heterozygosity and polymorphism > information content etc. > I am sorry if this question is not relevant to this R platform. I have > searched for 3 hours. > > Thank you, > > Ding > > ---------------------------------------------------------------------- > ------------------------------------------------------------ > -SECURITY/CONFIDENTIALITY WARNING- > > This message and any attachments are intended solely for the individual or > entity to which they are addressed. This communication may contain > information that is privileged, confidential, or exempt from disclosure > under applicable law (e.g., personal health information, research data, > financial information). Because this e-mail has been sent without > encryption, individuals other than the intended recipient may be able to > view the information, forward it to others or tamper with the information > without the knowledge or consent of the sender. If you are not the intended > recipient, or the employee or person responsible for delivering the message > to the intended recipient, any dissemination, distribution or copying of > the communication is strictly prohibited. If you received the communication > in error, please notify the sender immediately by replying to this message > and deleting the message and any accompanying files from your system. If, > due to the security risks, you do not wish to rec > eive further communications via e-mail, please reply to this message and > inform the sender that you do not wish to receive further e-mail from the > sender. (LCP301) > ------------------------------------------------------------ > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >[[alternative HTML version deleted]]