I did not put an example because it is a question of the basic syntax of this function, not about the data at hand. However, here is a working example: ``` library(vegan) data(dune) spAbund <- rowSums(dune) raremin <- min(rowSums(dune)) rarecurve(dune, col = "blue", es = TRUE) ``` Thank you On Mon, Oct 21, 2019 at 2:41 PM Eric Berger <ericjberger at gmail.com> wrote:> > You might improve your chances for getting a response by supplying > a minimal reproducible example. Remember to include all the library() commands > showing which packages you are using. > > > On Mon, Oct 21, 2019 at 2:53 PM Luigi Marongiu <marongiu.luigi at gmail.com> wrote: >> >> Hello, >> I am using the package vegan to generate rarefaction curves with the >> function rarecurve. >> Is it possible to add error bars to the plot? I tried to add se >> FALSE but it did not work. >> Also, would it be possible to remove the box around the label of the data? >> Thank you >> >> -- >> Best regards, >> Luigi >> >> ______________________________________________ >> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see >> https://stat.ethz.ch/mailman/listinfo/r-help >> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html >> and provide commented, minimal, self-contained, reproducible code.-- Best regards, Luigi
sorry there was a typo: it is `se = TRUE` but the result is the same: SE is not a rarecurve's parameter. On Mon, Oct 21, 2019 at 4:41 PM Luigi Marongiu <marongiu.luigi at gmail.com> wrote:> > I did not put an example because it is a question of the basic syntax > of this function, not about the data at hand. However, here is a > working example: > > ``` > library(vegan) > data(dune) > spAbund <- rowSums(dune) > raremin <- min(rowSums(dune)) > rarecurve(dune, col = "blue", es = TRUE) > ``` > > Thank you > > On Mon, Oct 21, 2019 at 2:41 PM Eric Berger <ericjberger at gmail.com> wrote: > > > > You might improve your chances for getting a response by supplying > > a minimal reproducible example. Remember to include all the library() commands > > showing which packages you are using. > > > > > > On Mon, Oct 21, 2019 at 2:53 PM Luigi Marongiu <marongiu.luigi at gmail.com> wrote: > >> > >> Hello, > >> I am using the package vegan to generate rarefaction curves with the > >> function rarecurve. > >> Is it possible to add error bars to the plot? I tried to add se > >> FALSE but it did not work. > >> Also, would it be possible to remove the box around the label of the data? > >> Thank you > >> > >> -- > >> Best regards, > >> Luigi > >> > >> ______________________________________________ > >> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > >> https://stat.ethz.ch/mailman/listinfo/r-help > >> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > >> and provide commented, minimal, self-contained, reproducible code. > > > > -- > Best regards, > Luigi-- Best regards, Luigi
Hi Luigi Using the help example for vegan:: rarefy It appears that the example for vegan:: rarefy does not work for SE=T in the plot command the x values (S) are a vector and yvalues Srare is a list It appears that the argument se = TRUE is not coded So that your commands cannot produce error bars Suggest contacting the maintainer Regards Duncan Duncan Mackay Department of Agronomy and Soil Science University of New England Armidale NSW 2350 -----Original Message----- From: R-help [mailto:r-help-bounces at r-project.org] On Behalf Of Luigi Marongiu Sent: Tuesday, 22 October 2019 01:44 To: Eric Berger Cc: r-help Subject: Re: [R] add error bars to rarecurve from package vegan sorry there was a typo: it is `se = TRUE` but the result is the same: SE is not a rarecurve's parameter. On Mon, Oct 21, 2019 at 4:41 PM Luigi Marongiu <marongiu.luigi at gmail.com> wrote:> > I did not put an example because it is a question of the basic syntax > of this function, not about the data at hand. However, here is a > working example: > > ``` > library(vegan) > data(dune) > spAbund <- rowSums(dune) > raremin <- min(rowSums(dune)) > rarecurve(dune, col = "blue", es = TRUE) > ``` > > Thank you > > On Mon, Oct 21, 2019 at 2:41 PM Eric Berger <ericjberger at gmail.com> wrote: > > > > You might improve your chances for getting a response by supplying > > a minimal reproducible example. Remember to include all the library()commands> > showing which packages you are using. > > > > > > On Mon, Oct 21, 2019 at 2:53 PM Luigi Marongiu<marongiu.luigi at gmail.com> wrote:> >> > >> Hello, > >> I am using the package vegan to generate rarefaction curves with the > >> function rarecurve. > >> Is it possible to add error bars to the plot? I tried to add se > >> FALSE but it did not work. > >> Also, would it be possible to remove the box around the label of thedata?> >> Thank you > >> > >> -- > >> Best regards, > >> Luigi > >> > >> ______________________________________________ > >> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > >> https://stat.ethz.ch/mailman/listinfo/r-help > >> PLEASE do read the posting guidehttp://www.R-project.org/posting-guide.html> >> and provide commented, minimal, self-contained, reproducible code. > > > > -- > Best regards, > Luigi-- Best regards, Luigi ______________________________________________ R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.