Juan Telleria Ruiz de Aguirre
2019-Sep-07 15:58 UTC
[R] How to use Conda with R + RStudio Server
Dear R-help Mailing List: For reproducibility, I want to use Conda + R (IRkernel), which will allow me to have within the same machine different "environments", with different versions of R installed, and specific package versions: http://know.continuum.io/rs/387-XNW-688/images/conda-cheatsheet.pdf As a result, I could execute in my command prompt:>> conda activate r_environment_A>> jupyter labAnd develop in a R environment with a fixed set of packages, and anyone with my same environment (Can be exported though a `conda env export` and created though a `conda create`) could reproduce the same analyses in their machine: https://docs.anaconda.com/anaconda/user-guide/tasks/using-r-language/ https://richpauloo.github.io/2018-05-16-Installing-the-R-kernel-in-Jupyter-Lab/ However, instead of using Jupyter Lab, I would like to use "RStudio Server" within my conda environment, but this is far more complicated, as I have not been able to install it in an easy way, so that, changing my conda environment, also changes my RStudio Server Environment: https://www.rstudio.com/products/rstudio/download-server/ Anyone has any gess on how to do it? Thank you! Juan Telleria [[alternative HTML version deleted]]
You may get a response here (including my poorly-informed one) but this is off topic (_do read the Posting Guide_) so you are basically barking into the darkness here. You should be asking in the RStudio community forum. As far as I am aware you have to run your RSS in a single environment, so conda is a poor match for that IDE. But hey... I could be wrong... go ask an expert. On September 7, 2019 8:58:19 AM PDT, Juan Telleria Ruiz de Aguirre <jtelleria.rproject at gmail.com> wrote:>Dear R-help Mailing List: > >For reproducibility, I want to use Conda + R (IRkernel), which will >allow >me to have within the same machine different "environments", with >different >versions of R installed, and specific package versions: > >http://know.continuum.io/rs/387-XNW-688/images/conda-cheatsheet.pdf > >As a result, I could execute in my command prompt: > >>> conda activate r_environment_A > >>> jupyter lab > >And develop in a R environment with a fixed set of packages, and anyone >with my same environment (Can be exported though a `conda env export` >and >created though a `conda create`) could reproduce the same analyses in >their >machine: > >https://docs.anaconda.com/anaconda/user-guide/tasks/using-r-language/ > >https://richpauloo.github.io/2018-05-16-Installing-the-R-kernel-in-Jupyter-Lab/ > > >However, instead of using Jupyter Lab, I would like to use "RStudio >Server" >within my conda environment, but this is far more complicated, as I >have >not been able to install it in an easy way, so that, changing my conda >environment, also changes my RStudio Server Environment: > >https://www.rstudio.com/products/rstudio/download-server/ > >Anyone has any gess on how to do it? > >Thank you! > >Juan Telleria > > [[alternative HTML version deleted]] > >______________________________________________ >R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see >https://stat.ethz.ch/mailman/listinfo/r-help >PLEASE do read the posting guide >http://www.R-project.org/posting-guide.html >and provide commented, minimal, self-contained, reproducible code.-- Sent from my phone. Please excuse my brevity.