Have been trying to run a few packages with dependency on the survey package (e.g. twang) and have run into trouble that I am not sure how to resolve. Any help would be appreciated, the code (and error messages) are below: --- R log begins ---> install.packages("survey")Installing package into ?D:/Users/Al Nerdi/Documents/R/win-library/3.5? (as ?lib? is unspecified) There is a binary version available but the source version is later: binary source needs_compilation survey 3.33-2 3.34 FALSE installing the source package ?survey? trying URL 'https://cran.rstudio.com/src/contrib/survey_3.34.tar.gz' Content type 'application/x-gzip' length 1476949 bytes (1.4 MB) downloaded 1.4 MB Warning: invalid package 'D:\Users\Al' Warning: invalid package 'Nerdi\AppData\Local\Temp\RtmpU3AmrY/downloaded_packages/survey_3.34.tar.gz' Error: ERROR: no packages specified In R CMD INSTALL Warning in install.packages : installation of package ?survey? had non-zero exit status The downloaded source packages are in ?D:\Users\Al Nerdi\AppData\Local\Temp\RtmpU3AmrY\downloaded_packages?> install.packages("twang")Installing package into ?D:/Users/Al Nerdi/Documents/R/win-library/3.5? (as ?lib? is unspecified) also installing the dependencies ?gbm?, ?survey? There is a binary version available but the source version is later: binary source needs_compilation survey 3.33-2 3.34 FALSE trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/gbm_2.1.4.zip' Content type 'application/zip' length 1094087 bytes (1.0 MB) downloaded 1.0 MB trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/twang_1.5.zip' Content type 'application/zip' length 1516991 bytes (1.4 MB) downloaded 1.4 MB package ?gbm? successfully unpacked and MD5 sums checked package ?twang? successfully unpacked and MD5 sums checked The downloaded binary packages are in D:\Users\Al Nerdi\AppData\Local\Temp\RtmpU3AmrY\downloaded_packages installing the source package ?survey? trying URL 'https://cran.rstudio.com/src/contrib/survey_3.34.tar.gz' Content type 'application/x-gzip' length 1476949 bytes (1.4 MB) downloaded 1.4 MB Warning: invalid package 'D:\Users\Al' Warning: invalid package 'Nerdi\AppData\Local\Temp\RtmpU3AmrY/downloaded_packages/survey_3.34.tar.gz' Error: ERROR: no packages specified In R CMD INSTALL Warning in install.packages : installation of package ?survey? had non-zero exit status The downloaded source packages are in ?D:\Users\Al Nerdi\AppData\Local\Temp\RtmpU3AmrY\downloaded_packages?> library(twang)Loading required package: gbm Loaded gbm 2.1.4 Error: package ?survey? required by ?twang? could not be found> R.Version()$`platform` [1] "x86_64-w64-mingw32" $arch [1] "x86_64" $os [1] "mingw32" $system [1] "x86_64, mingw32" $status [1] "" $major [1] "3" $minor [1] "5.1" $year [1] "2018" $month [1] "07" $day [1] "02" $`svn rev` [1] "74947" $language [1] "R" $version.string [1] "R version 3.5.1 (2018-07-02)" $nickname [1] "Feather Spray" --- R log ends --- I am not sure how to address this. Any suggestions will be great! Grazie, Al Nerdi [[alternative HTML version deleted]]
Dear Al It looks like the problem may be the embedded space in Al Nerdi What happens if you manually download the tar.gz file, put it somewhere convenient and then from the commend line run R CMD INSTALL survey_3.34.tar.gz You will need to make sure R is on your path first Michael On 12/10/2018 09:31, Alexander Nervedi wrote:> Have been trying to run a few packages with dependency on the survey package (e.g. twang) and have run into trouble that I am not sure how to resolve. Any help would be appreciated, the code (and error messages) are below: > > --- R log begins --- >> install.packages("survey") > Installing package into ?D:/Users/Al Nerdi/Documents/R/win-library/3.5? > (as ?lib? is unspecified) > > There is a binary version available but the source version is later: > binary source needs_compilation > survey 3.33-2 3.34 FALSE > > installing the source package ?survey? > > trying URL 'https://cran.rstudio.com/src/contrib/survey_3.34.tar.gz' > Content type 'application/x-gzip' length 1476949 bytes (1.4 MB) > downloaded 1.4 MB > > Warning: invalid package 'D:\Users\Al' > Warning: invalid package 'Nerdi\AppData\Local\Temp\RtmpU3AmrY/downloaded_packages/survey_3.34.tar.gz' > Error: ERROR: no packages specified > In R CMD INSTALL > Warning in install.packages : > installation of package ?survey? had non-zero exit status > > The downloaded source packages are in > ?D:\Users\Al Nerdi\AppData\Local\Temp\RtmpU3AmrY\downloaded_packages? > >> install.packages("twang") > Installing package into ?D:/Users/Al Nerdi/Documents/R/win-library/3.5? > (as ?lib? is unspecified) > also installing the dependencies ?gbm?, ?survey? > > > There is a binary version available but the source version is later: > binary source needs_compilation > survey 3.33-2 3.34 FALSE > > trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/gbm_2.1.4.zip' > Content type 'application/zip' length 1094087 bytes (1.0 MB) > downloaded 1.0 MB > > trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/twang_1.5.zip' > Content type 'application/zip' length 1516991 bytes (1.4 MB) > downloaded 1.4 MB > > package ?gbm? successfully unpacked and MD5 sums checked > package ?twang? successfully unpacked and MD5 sums checked > > The downloaded binary packages are in > D:\Users\Al Nerdi\AppData\Local\Temp\RtmpU3AmrY\downloaded_packages > installing the source package ?survey? > > trying URL 'https://cran.rstudio.com/src/contrib/survey_3.34.tar.gz' > Content type 'application/x-gzip' length 1476949 bytes (1.4 MB) > downloaded 1.4 MB > > Warning: invalid package 'D:\Users\Al' > Warning: invalid package 'Nerdi\AppData\Local\Temp\RtmpU3AmrY/downloaded_packages/survey_3.34.tar.gz' > Error: ERROR: no packages specified > In R CMD INSTALL > Warning in install.packages : > installation of package ?survey? had non-zero exit status > > The downloaded source packages are in > ?D:\Users\Al Nerdi\AppData\Local\Temp\RtmpU3AmrY\downloaded_packages? >> library(twang) > Loading required package: gbm > Loaded gbm 2.1.4 > Error: package ?survey? required by ?twang? could not be found > >> R.Version() > $`platform` > [1] "x86_64-w64-mingw32" > > $arch > [1] "x86_64" > > $os > [1] "mingw32" > > $system > [1] "x86_64, mingw32" > > $status > [1] "" > > $major > [1] "3" > > $minor > [1] "5.1" > > $year > [1] "2018" > > $month > [1] "07" > > $day > [1] "02" > > $`svn rev` > [1] "74947" > > $language > [1] "R" > > $version.string > [1] "R version 3.5.1 (2018-07-02)" > > $nickname > [1] "Feather Spray" > > --- R log ends --- > > I am not sure how to address this. Any suggestions will be great! > > Grazie, > > Al Nerdi > > [[alternative HTML version deleted]] > > > > ______________________________________________ > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >-- Michael http://www.dewey.myzen.co.uk/home.html
Hi Michael, I think you are spot on. Haven't resolved the issue yet. Here is what i get:> utils:::menuInstallLocal()* installing *source* package 'survey' ... ** package 'survey' successfully unpacked and MD5 sums checked ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded *** arch - i386 Fatal error: cannot open file 'D:\Users\Al': No such file or directory *** arch - x64 Fatal error: cannot open file 'D:\Users\Al': No such file or directory ERROR: loading failed for 'i386', 'x64' * removing 'D:/Users/Al Nerdi/Documents/R/win-library/3.3/survey' Warning messages: 1: running command '"C:/PROGRA~1/R/R-33~1.1/bin/i386/R" CMD INSTALL -l "D:\Users\Al Nerdi\Documents\R\win-library\3.3" "D:/downloads/survey_3.34.tar.gz"' had status 1 2: In install.packages(files[tarballs], .libPaths()[1L], repos = NULL, : installation of package ?D:/downloads/survey_3.34.tar.gz? had non-zero exit status>I think i might have to reinstall R in the root directly (rather than under program files) so that there are no spaces in path names. Thanks for the pointer, best wishes, Alnerdi ________________________________ From: Michael Dewey <lists at dewey.myzen.co.uk> Sent: Friday, October 12, 2018 4:33 AM To: Alexander Nervedi; r-help at R-project.org Subject: Re: [R] install issue with survey package? Dear Al It looks like the problem may be the embedded space in Al Nerdi What happens if you manually download the tar.gz file, put it somewhere convenient and then from the commend line run R CMD INSTALL survey_3.34.tar.gz You will need to make sure R is on your path first Michael On 12/10/2018 09:31, Alexander Nervedi wrote:> Have been trying to run a few packages with dependency on the survey package (e.g. twang) and have run into trouble that I am not sure how to resolve. Any help would be appreciated, the code (and error messages) are below: > > --- R log begins --- >> install.packages("survey") > Installing package into ?D:/Users/Al Nerdi/Documents/R/win-library/3.5? > (as ?lib? is unspecified) > > There is a binary version available but the source version is later: > binary source needs_compilation > survey 3.33-2 3.34 FALSE > > installing the source package ?survey? > > trying URL 'https://cran.rstudio.com/src/contrib/survey_3.34.tar.gz' > Content type 'application/x-gzip' length 1476949 bytes (1.4 MB) > downloaded 1.4 MB > > Warning: invalid package 'D:\Users\Al' > Warning: invalid package 'Nerdi\AppData\Local\Temp\RtmpU3AmrY/downloaded_packages/survey_3.34.tar.gz' > Error: ERROR: no packages specified > In R CMD INSTALL > Warning in install.packages : > installation of package ?survey? had non-zero exit status > > The downloaded source packages are in > ?D:\Users\Al Nerdi\AppData\Local\Temp\RtmpU3AmrY\downloaded_packages? > >> install.packages("twang") > Installing package into ?D:/Users/Al Nerdi/Documents/R/win-library/3.5? > (as ?lib? is unspecified) > also installing the dependencies ?gbm?, ?survey? > > > There is a binary version available but the source version is later: > binary source needs_compilation > survey 3.33-2 3.34 FALSE > > trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/gbm_2.1.4.zip' > Content type 'application/zip' length 1094087 bytes (1.0 MB) > downloaded 1.0 MB > > trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.5/twang_1.5.zip' > Content type 'application/zip' length 1516991 bytes (1.4 MB) > downloaded 1.4 MB > > package ?gbm? successfully unpacked and MD5 sums checked > package ?twang? successfully unpacked and MD5 sums checked > > The downloaded binary packages are in > D:\Users\Al Nerdi\AppData\Local\Temp\RtmpU3AmrY\downloaded_packages > installing the source package ?survey? > > trying URL 'https://cran.rstudio.com/src/contrib/survey_3.34.tar.gz' > Content type 'application/x-gzip' length 1476949 bytes (1.4 MB) > downloaded 1.4 MB > > Warning: invalid package 'D:\Users\Al' > Warning: invalid package 'Nerdi\AppData\Local\Temp\RtmpU3AmrY/downloaded_packages/survey_3.34.tar.gz' > Error: ERROR: no packages specified > In R CMD INSTALL > Warning in install.packages : > installation of package ?survey? had non-zero exit status > > The downloaded source packages are in > ?D:\Users\Al Nerdi\AppData\Local\Temp\RtmpU3AmrY\downloaded_packages? >> library(twang) > Loading required package: gbm > Loaded gbm 2.1.4 > Error: package ?survey? required by ?twang? could not be found > >> R.Version() > $`platform` > [1] "x86_64-w64-mingw32" > > $arch > [1] "x86_64" > > $os > [1] "mingw32" > > $system > [1] "x86_64, mingw32" > > $status > [1] "" > > $major > [1] "3" > > $minor > [1] "5.1" > > $year > [1] "2018" > > $month > [1] "07" > > $day > [1] "02" > > $`svn rev` > [1] "74947" > > $language > [1] "R" > > $version.string > [1] "R version 3.5.1 (2018-07-02)" > > $nickname > [1] "Feather Spray" > > --- R log ends --- > > I am not sure how to address this. Any suggestions will be great! > > Grazie, > > Al Nerdi > > [[alternative HTML version deleted]] > > > > ______________________________________________ > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >-- Michael http://www.dewey.myzen.co.uk/home.html [[alternative HTML version deleted]]