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Alexander.Herr at csiro.au

2018-Mar-05 23:28 UTC

[R] raster time series statistics

Hi List,

The following code returns an "Error in as.POSIXlt.character(x, tz, ...) : 
character string is not in a standard unambiguous format"

require(raster)
require(rts)
require(stringi)
r <- raster(ncol=100, nrow=100)
values(r) <- runif(ncell(r))
list(ID=seq(1:24),month=rep(str_pad(1:12, pad = 0,width = 2 ,
"left"),2),year=sort(rep(2016:2017,12)))->dt
stack(r)->s
r->rs
for(i in 1:23){
rs[]<-r[]*i
  addLayer(s,rs)->s
print(nlayers(s))
}
timelst<-paste0(unlist(dt['year']),'-',unlist(dt['month']))
rts(s,time=as.yearmon(timelst))->rsts
str(rsts at time)
apply.monthly(rsts,mean)

I was expecting that the statistics accept the yearmonth format of the timeslot,
as it allows subsetting.
Any suggestions?
Thanks
Herry

	[[alternative HTML version deleted]]

David Winsemius

2018-Mar-06 00:10 UTC

head link

[R] raster time series statistics

> On Mar 5, 2018, at 3:28 PM, <Alexander.Herr at csiro.au>
<Alexander.Herr at csiro.au> wrote:
> 
> Hi List,
> 
> The following code returns an "Error in as.POSIXlt.character(x, tz,
...) :   character string is not in a standard unambiguous format"
I'm unable to produce that error. Which function was being evaluated to
produce the error? I don't see where as.POSIXlt would have been called. You
don't have any Date or POSIXt-classed variables. (I did need to also load
the stringr package to get str_pad into my workspace.)
> 
> require(raster)
> require(rts)
> require(stringi)
> r <- raster(ncol=100, nrow=100)
> values(r) <- runif(ncell(r))
> list(ID=seq(1:24),month=rep(str_pad(1:12, pad = 0,width = 2 ,
"left"),2),year=sort(rep(2016:2017,12)))->dt
> stack(r)->s
> r->rs
> for(i in 1:23){
> rs[]<-r[]*i
>  addLayer(s,rs)->s
> print(nlayers(s))
> }
>
timelst<-paste0(unlist(dt['year']),'-',unlist(dt['month']))
> rts(s,time=as.yearmon(timelst))->rsts
> str(rsts at time)
> apply.monthly(rsts,mean)
> 
> I was expecting that the statistics accept the yearmonth format of the
timeslot, as it allows subsetting.
> Any suggestions?
> Thanks
> Herry
> 
> 	[[alternative HTML version deleted]]
> 
> ______________________________________________
> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
David Winsemius
Alameda, CA, USA

'Any technology distinguishable from magic is insufficiently advanced.' 
-Gehm's Corollary to Clarke's Third Law

Jim Lemon

2018-Mar-06 00:13 UTC

head link

[R] raster time series statistics

Hi Herry,
This is probably due to a call to strptime (or similar). No, it
doesn't accept %Y-%m as a valid format. Maybe add a constant day to
all the dates as that will work:

dt<-list(ID=seq(1:24),month=rep(formatC(1:12,flag=0,width=2),2),
 year=sort(rep(2016:2017,12)))
timelst<-paste(unlist(dt['year']),unlist(dt['month']),"01",sep="-")
strptime(timelst,format="%Y-%m-%d")

Jim



On Tue, Mar 6, 2018 at 10:28 AM,  <Alexander.Herr at csiro.au>
wrote:> Hi List,
>
> The following code returns an "Error in as.POSIXlt.character(x, tz,
...) :   character string is not in a standard unambiguous format"
>
> require(raster)
> require(rts)
> require(stringi)
> r <- raster(ncol=100, nrow=100)
> values(r) <- runif(ncell(r))
> list(ID=seq(1:24),month=rep(str_pad(1:12, pad = 0,width = 2 ,
"left"),2),year=sort(rep(2016:2017,12)))->dt
> stack(r)->s
> r->rs
> for(i in 1:23){
> rs[]<-r[]*i
>   addLayer(s,rs)->s
> print(nlayers(s))
> }
>
timelst<-paste0(unlist(dt['year']),'-',unlist(dt['month']))
> rts(s,time=as.yearmon(timelst))->rsts
> str(rsts at time)
> apply.monthly(rsts,mean)
>
> I was expecting that the statistics accept the yearmonth format of the
timeslot, as it allows subsetting.
> Any suggestions?
> Thanks
> Herry
>
>         [[alternative HTML version deleted]]
>
> ______________________________________________
> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.

Alexander.Herr at csiro.au

2018-Mar-06 00:32 UTC

head link

[R] raster time series statistics

Thanks Jim

Still getting the same error for apply.montly
Updated code:

require(raster)
require(rts)
require(stringr)
r <- raster(ncol=100, nrow=100)
values(r) <- runif(ncell(r))
stack(r)->s
r->rs
for(i in 1:23){
 rs[]<-r[]*i
  addLayer(s,rs)->s
 print(nlayers(s))
}
dt<-list(ID=seq(1:24),month=rep(formatC(1:12,flag=0,width=2),2),
 year=sort(rep(2016:2017,12)))
 timelst<-paste0(unlist(dt['year']),'-',unlist(dt['month']),"-01")
strptime(timelst,format="%Y-%m-%d")->t1

rts(s,time=as.yearmon(t1))->rsts
subset(rsts,'2017')->r2017
class(r2017 at time)
class(rsts at time)

apply.monthly(rsts,mean)



-----Original Message-----
From: Jim Lemon [mailto:drjimlemon at gmail.com] 
Sent: Tuesday, 6 March 2018 11:14 AM
To: Herr, Alexander (L&W, Black Mountain) <Alexander.Herr at csiro.au>
Cc: r-help mailing list <r-help at r-project.org>
Subject: Re: [R] raster time series statistics

Hi Herry,
This is probably due to a call to strptime (or similar). No, it doesn't
accept %Y-%m as a valid format. Maybe add a constant day to all the dates as
that will work:

dt<-list(ID=seq(1:24),month=rep(formatC(1:12,flag=0,width=2),2),
 year=sort(rep(2016:2017,12)))
timelst<-paste(unlist(dt['year']),unlist(dt['month']),"01",sep="-")
strptime(timelst,format="%Y-%m-%d")

Jim



On Tue, Mar 6, 2018 at 10:28 AM,  <Alexander.Herr at csiro.au>
wrote:> Hi List,
>
> The following code returns an "Error in as.POSIXlt.character(x, tz,
...) :   character string is not in a standard unambiguous format"
>
> require(raster)
> require(rts)
> require(stringi)
> r <- raster(ncol=100, nrow=100)
> values(r) <- runif(ncell(r))
> list(ID=seq(1:24),month=rep(str_pad(1:12, pad = 0,width = 2 , 
> "left"),2),year=sort(rep(2016:2017,12)))->dt
> stack(r)->s
> r->rs
> for(i in 1:23){
> rs[]<-r[]*i
>   addLayer(s,rs)->s
> print(nlayers(s))
> }
>
timelst<-paste0(unlist(dt['year']),'-',unlist(dt['month']))
> rts(s,time=as.yearmon(timelst))->rsts
> str(rsts at time)
> apply.monthly(rsts,mean)
>
> I was expecting that the statistics accept the yearmonth format of the
timeslot, as it allows subsetting.
> Any suggestions?
> Thanks
> Herry
>
>         [[alternative HTML version deleted]]
>
> ______________________________________________
> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see 
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide 
> http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.

Alexander.Herr at csiro.au

2018-Mar-06 00:36 UTC

head link

[R] raster time series statistics

Last line in the following (updated) code produces the error
require(raster)
require(rts)
require(stringr)
r <- raster(ncol=100, nrow=100)
values(r) <- runif(ncell(r))
stack(r)->s
r->rs
for(i in 1:23){
 rs[]<-r[]*i
  addLayer(s,rs)->s
 print(nlayers(s))
}
dt<-list(ID=seq(1:24),month=rep(formatC(1:12,flag=0,width=2),2),
 year=sort(rep(2016:2017,12)))
 timelst<-paste0(unlist(dt['year']),'-',unlist(dt['month']),"-01")
strptime(timelst,format="%Y-%m-%d")->t1

rts(s,time=as.yearmon(t1))->rsts
subset(rsts,'2017')->r2017
class(r2017 at time)
class(rsts at time)

apply.monthly(rsts,mean)



-----Original Message-----
From: David Winsemius [mailto:dwinsemius at comcast.net] 
Sent: Tuesday, 6 March 2018 11:10 AM
To: Herr, Alexander (L&W, Black Mountain) <Alexander.Herr at csiro.au>
Cc: r-help at r-project.org
Subject: Re: [R] raster time series statistics

> On Mar 5, 2018, at 3:28 PM, <Alexander.Herr at csiro.au>
<Alexander.Herr at csiro.au> wrote:
> 
> Hi List,
> 
> The following code returns an "Error in as.POSIXlt.character(x, tz,
...) :   character string is not in a standard unambiguous format"
I'm unable to produce that error. Which function was being evaluated to
produce the error? I don't see where as.POSIXlt would have been called. You
don't have any Date or POSIXt-classed variables. (I did need to also load
the stringr package to get str_pad into my workspace.)
> 
> require(raster)
> require(rts)
> require(stringi)
> r <- raster(ncol=100, nrow=100)
> values(r) <- runif(ncell(r))
> list(ID=seq(1:24),month=rep(str_pad(1:12, pad = 0,width = 2 , 
> "left"),2),year=sort(rep(2016:2017,12)))->dt
> stack(r)->s
> r->rs
> for(i in 1:23){
> rs[]<-r[]*i
>  addLayer(s,rs)->s
> print(nlayers(s))
> }
>
timelst<-paste0(unlist(dt['year']),'-',unlist(dt['month']))
> rts(s,time=as.yearmon(timelst))->rsts
> str(rsts at time)
> apply.monthly(rsts,mean)
> 
> I was expecting that the statistics accept the yearmonth format of the
timeslot, as it allows subsetting.
> Any suggestions?
> Thanks
> Herry
> 
> 	[[alternative HTML version deleted]]
> 
> ______________________________________________
> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see 
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide 
> http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
David Winsemius
Alameda, CA, USA

'Any technology distinguishable from magic is insufficiently advanced.' 
-Gehm's Corollary to Clarke's Third Law

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