Hello, I tried intalling mice package and got the following error: * installing *source* package ?mice? ... ** package ?mice? successfully unpacked and MD5 sums checked ** libs g++ -I/usr/local/lib/R/include -DNDEBUG -I"/home/djj/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o g++ -I/usr/local/lib/R/include -DNDEBUG -I"/home/djj/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I/usr/local/include -fpic -g -O2 -c match.cpp -o match.o g++ -shared -L/usr/local/lib -o mice.so RcppExports.o match.o Welcome to R! Goodbye! g++: error: Welcome: No such file or directory g++: error: to: No such file or directory g++: error: R!: No such file or directory g++: error: Goodbye!: No such file or directory /usr/local/lib/R/share/make/shlib.mk:6: recipe for target 'mice.so' failed make: *** [mice.so] Error 1 ERROR: compilation failed for package ?mice? * removing ?/home/djj/R/x86_64-pc-linux-gnu-library/3.4/mice? The downloaded source packages are in ?/tmp/Rtmpgam70t/downloaded_packages? Error in library(mice) : there is no package called ?mice? In addition: Warning message: In install.packages(deparse(substitute(mice)), repos = "http://cran.us.r-project.org") : installation of package ?mice? had non-zero exit status I'm unable to resolve it. Any help please? Best regards, Jeremie
Hello, The installation of the developpment version seems to go through https://github.com/stefvanbuuren/mice, Best regards, Jeremie On Wed, Nov 15, 2017 at 10:08 AM, Jeremie Juste <jeremiejuste at gmail.com> wrote:> > > Hello, > > I tried intalling mice package and got the following error: > > * installing *source* package ?mice? ... > ** package ?mice? successfully unpacked and MD5 sums checked > ** libs > g++ -I/usr/local/lib/R/include -DNDEBUG -I"/home/djj/R/x86_64-pc- > linux-gnu-library/3.4/Rcpp/include" -I/usr/local/include -fpic -g -O2 > -c RcppExports.cpp -o RcppExports.o > g++ -I/usr/local/lib/R/include -DNDEBUG -I"/home/djj/R/x86_64-pc- > linux-gnu-library/3.4/Rcpp/include" -I/usr/local/include -fpic -g -O2 > -c match.cpp -o match.o > g++ -shared -L/usr/local/lib -o mice.so RcppExports.o match.o Welcome to > R! Goodbye! > g++: error: Welcome: No such file or directory > g++: error: to: No such file or directory > g++: error: R!: No such file or directory > g++: error: Goodbye!: No such file or directory > /usr/local/lib/R/share/make/shlib.mk:6: recipe for target 'mice.so' failed > make: *** [mice.so] Error 1 > ERROR: compilation failed for package ?mice? > * removing ?/home/djj/R/x86_64-pc-linux-gnu-library/3.4/mice? > > The downloaded source packages are in > ?/tmp/Rtmpgam70t/downloaded_packages? > Error in library(mice) : there is no package called ?mice? > In addition: Warning message: > In install.packages(deparse(substitute(mice)), repos = " > http://cran.us.r-project.org") : > installation of package ?mice? had non-zero exit status > > I'm unable to resolve it. Any help please? > > Best regards, > > Jeremie >-- J?r?mie Juste [[alternative HTML version deleted]]
> On Nov 15, 2017, at 1:08 AM, Jeremie Juste <jeremiejuste at gmail.com> wrote: > > > > Hello, > > I tried intalling mice package and got the following error: > > * installing *source* package ?mice? ... > ** package ?mice? successfully unpacked and MD5 sums checked > ** libs > g++ -I/usr/local/lib/R/include -DNDEBUG -I"/home/djj/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o > g++ -I/usr/local/lib/R/include -DNDEBUG -I"/home/djj/R/x86_64-pc-linux-gnu-library/3.4/Rcpp/include" -I/usr/local/include -fpic -g -O2 -c match.cpp -o match.o > g++ -shared -L/usr/local/lib -o mice.so RcppExports.o match.o Welcome to R! Goodbye!Somehow you have sent an R "welcome message" to the installer script. What was the action that started all this? Were you in an R session or was this something done from a bash console?> g++: error: Welcome: No such file or directory > g++: error: to: No such file or directory > g++: error: R!: No such file or directory > g++: error: Goodbye!: No such file or directory > /usr/local/lib/R/share/make/shlib.mk:6: recipe for target 'mice.so' failed > make: *** [mice.so] Error 1 > ERROR: compilation failed for package ?mice? > * removing ?/home/djj/R/x86_64-pc-linux-gnu-library/3.4/mice? > > The downloaded source packages are in > ?/tmp/Rtmpgam70t/downloaded_packages? > Error in library(mice) : there is no package called ?mice? > In addition: Warning message: > In :That's a rather strange method for invoking install.packages. Usually it would be just: install.packages("mice", repos = "http://cran.us.r-project.org") Your best venue for linux installation questions is probably: https://stat.ethz.ch/mailman/listinfo/r-sig-db> installation of package ?mice? had non-zero exit status > > I'm unable to resolve it. Any help please? > > Best regards, > > Jeremie > > ______________________________________________ > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code.David Winsemius Alameda, CA, USA 'Any technology distinguishable from magic is insufficiently advanced.' -Gehm's Corollary to Clarke's Third Law
Hello,
Many thanks for your time
My mistake was to put <cat("Welcome to R!\n")> in the .Rprofile.
I've never got any problem with the package installation before though.
Best regards,
Jeremie
On Wed, Nov 15, 2017 at 6:49 PM, David Winsemius <dwinsemius at
comcast.net>
wrote:
>
> > On Nov 15, 2017, at 1:08 AM, Jeremie Juste <jeremiejuste at
gmail.com>
> wrote:
> >
> >
> >
> > Hello,
> >
> > I tried intalling mice package and got the following error:
> >
> > * installing *source* package ?mice? ...
> > ** package ?mice? successfully unpacked and MD5 sums checked
> > ** libs
> > g++ -I/usr/local/lib/R/include -DNDEBUG
-I"/home/djj/R/x86_64-pc-
> linux-gnu-library/3.4/Rcpp/include" -I/usr/local/include -fpic -g
-O2
> -c RcppExports.cpp -o RcppExports.o
> > g++ -I/usr/local/lib/R/include -DNDEBUG
-I"/home/djj/R/x86_64-pc-
> linux-gnu-library/3.4/Rcpp/include" -I/usr/local/include -fpic -g
-O2
> -c match.cpp -o match.o
> > g++ -shared -L/usr/local/lib -o mice.so RcppExports.o match.o Welcome
to
> R! Goodbye!
>
> Somehow you have sent an R "welcome message" to the installer
script. What
> was the action that started all this? Were you in an R session or was this
> something done from a bash console?
>
> > g++: error: Welcome: No such file or directory
> > g++: error: to: No such file or directory
> > g++: error: R!: No such file or directory
> > g++: error: Goodbye!: No such file or directory
> > /usr/local/lib/R/share/make/shlib.mk:6: recipe for target
'mice.so'
> failed
> > make: *** [mice.so] Error 1
> > ERROR: compilation failed for package ?mice?
> > * removing ?/home/djj/R/x86_64-pc-linux-gnu-library/3.4/mice?
> >
> > The downloaded source packages are in
> > ?/tmp/Rtmpgam70t/downloaded_packages?
> > Error in library(mice) : there is no package called ?mice?
> > In addition: Warning message:
> > In :
>
> That's a rather strange method for invoking install.packages. Usually
it
> would be just:
>
> install.packages("mice", repos =
"http://cran.us.r-project.org")
>
>
>
> Your best venue for linux installation questions is probably:
>
> https://stat.ethz.ch/mailman/listinfo/r-sig-db
>
>
> > installation of package ?mice? had non-zero exit status
> >
> > I'm unable to resolve it. Any help please?
> >
> > Best regards,
> >
> > Jeremie
> >
> > ______________________________________________
> > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> > https://stat.ethz.ch/mailman/listinfo/r-help
> > PLEASE do read the posting guide http://www.R-project.org/
> posting-guide.html
> > and provide commented, minimal, self-contained, reproducible code.
>
> David Winsemius
> Alameda, CA, USA
>
> 'Any technology distinguishable from magic is insufficiently
advanced.'
> -Gehm's Corollary to Clarke's Third Law
>
>
>
>
>
>
--
J?r?mie Juste
[[alternative HTML version deleted]]