Hi, I did a quick search for other packages that provide the beta binomial distribution and found "rmutil".> install.packages("rmutil")The package has the CDF (pbetabinom) and inverse CDF (qbetabinom) among other functions. HTH, Eric On Wed, Nov 1, 2017 at 7:50 AM, MCGUIRE, Rhydwyn < rmcgu at doh.health.nsw.gov.au> wrote:> Hi there, > > It looks like you also need the bioconductor package biobase, I found > instructions for downloading that package here: > www.bioconductor.org/install > > Good luck. > > Cheers, > Rhydwyn > > -----Original Message----- > From: R-help [mailto:r-help-bounces at r-project.org] On Behalf Of Amany > Abdel-Karim > Sent: Wednesday, 1 November 2017 2:13 PM > To: R-help at stat.math.ethz.ch > Subject: [R] beta binomial distribution installation > > Hello, > > I tried to install package TailRank using the command install.packages > (RankTail) and library (TailRank) but I got the following errors. So, how > can I install TaiRank in Rstudio to have se beta-binomial distribution, CDF > and inverse CDG of beta-binomal? > > The commands I used are: > > > install.packages("TailRank") > > Installing package into C:/Users/stator-guest/Documents/R/win-library/3.4 > > (as lib is unspecified) > > Warning in install.packages : > > dependency Biobase is not available > > trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.4/TailRank_ > 3.1.3.zip' > > Content type 'application/zip' length 331270 bytes (323 KB) > > downloaded 323 KB > > > > package TailRank successfully unpacked and MD5 sums checked > > > > The downloaded binary packages are in > > C:\Users\stator-guest\AppData\Local\Temp\RtmpoVx40V\ > downloaded_packages > > > library(TailRank) > > Error: package or namespace load failed for TailRank in loadNamespace(i, > c(lib.loc, .libPaths()), versionCheck = vI[[i]]): > > there is no package called Biobase > > In addition: Warning message: > > package TailRank was built under R version 3.4.2 > > > > > [[alternative HTML version deleted]] > > ____________________________________________________________ > ______________________________________________ > This email has been scanned for the NSW Ministry of Health by the Websense > Hosted Email Security System. > Emails and attachments are monitored to ensure compliance with the NSW > Ministry of health's Electronic Messaging Policy. > ____________________________________________________________ > ______________________________________________ > ____________________________________________________________ > ___________________________________________ > Disclaimer: This message is intended for the addressee named and may > contain confidential information. > If you are not the intended recipient, please delete it and notify the > sender. > Views expressed in this message are those of the individual sender, and > are not necessarily the views of the NSW Ministry of Health. > ____________________________________________________________ > ___________________________________________ > This email has been scanned for the NSW Ministry of Health by the Websense > Hosted Email Security System. > Emails and attachments are monitored to ensure compliance with the NSW > Ministry of Health's Electronic Messaging Policy. > ____________________________________________________________ > ___________________________________________ > ______________________________________________ > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/ > posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >[[alternative HTML version deleted]]
Hello,
Thank you for your response. I need to install RankTail package since it
contains the beta binomial distribution, CDF and inverse CDF in the usual form
which I need to use. However rmutil package contain unusual forms for these
functions. So it is easier for me to deal with the forms are contained in
RankTail.
I tried to install bioconductor package, using the following commands but I
still got the following errors:
(1) I tried biocLite() and then library ("TailRank"), I got the
following errors.
> biocLite()
Error in biocLite() : could not find function
"biocLite"> library("TailRank")
Loading required package: oompaBase
Error: package or namespace load failed for ?TailRank? in loadNamespace(i,
c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
there is no package called ?Biobase?
In addition: Warning messages:
1: package ?TailRank? was built under R version 3.4.2
2: package ?oompaBase? was built under R version 3.4.2
(2) I tried to write the command biocLite(), then
biocLite("TailRank"), I got the following errors:
> biocLite()
Error in biocLite() : could not find function
"biocLite"> biocLite("ilRank")
Error in biocLite("ilRank") : could not find function
"biocLite"> biocLite()
Error in biocLite() : could not find function
"biocLite"> biocLite("TailRank")
Error in biocLite("TailRank") : could not find function
"biocLite"
>
Also, I checked under packages on the right side of the R window and I found
TailRank , Description is Tail-Rank statistic, and version is 3.1.3. So, I tried
to write the following code in the console window to check if the package works:
> N<-20
> u<-3
> v<-10
> p<-u/u+v
> x<-0:N
> yy<-dbb(x,N,u,v)
I got the following error:
Error in dbb(x, N, u, v) : could not find function "dbb"
>
I am confused because if the package TailRank is already there, why the pervious
code does not work to calculate dbb (x,N,u,v) and I got error? If I do not have
the package, would you please let me know the right commands I should write in
the script window to install TaiRank because the commands I used (which I
mentioned at the beginning of the email did not work and gave errors). I
appreciate your help since I am a new user of R.
Amany
________________________________
From: Eric Berger <ericjberger at gmail.com>
Sent: Wednesday, November 1, 2017 2:42 AM
To: MCGUIRE, Rhydwyn
Cc: Amany Abdel-Karim; R-help at stat.math.ethz.ch
Subject: Re: [R] beta binomial distribution installation
Hi,
I did a quick search for other packages that provide the beta binomial
distribution and found "rmutil".
> install.packages("rmutil")
The package has the CDF (pbetabinom) and inverse CDF (qbetabinom) among other
functions.
HTH,
Eric
On Wed, Nov 1, 2017 at 7:50 AM, MCGUIRE, Rhydwyn <rmcgu at
doh.health.nsw.gov.au<mailto:rmcgu at doh.health.nsw.gov.au>> wrote:
Hi there,
It looks like you also need the bioconductor package biobase, I found
instructions for downloading that package here:
www.bioconductor.org/install<http://www.bioconductor.org/install>
Good luck.
Cheers,
Rhydwyn
-----Original Message-----
From: R-help [mailto:r-help-bounces at r-project.org<mailto:r-help-bounces at
r-project.org>] On Behalf Of Amany Abdel-Karim
Sent: Wednesday, 1 November 2017 2:13 PM
To: R-help at stat.math.ethz.ch<mailto:R-help at stat.math.ethz.ch>
Subject: [R] beta binomial distribution installation
Hello,
I tried to install package TailRank using the command install.packages
(RankTail) and library (TailRank) but I got the following errors. So, how can I
install TaiRank in Rstudio to have se beta-binomial distribution, CDF and
inverse CDG of beta-binomal?
The commands I used are:
> install.packages("TailRank")
Installing package into C:/Users/stator-guest/Documents/R/win-library/3.4
(as lib is unspecified)
Warning in install.packages :
dependency Biobase is not available
trying URL
'https://cran.rstudio.com/bin/windows/contrib/3.4/TailRank_3.1.3.zip'
Content type 'application/zip' length 331270 bytes (323 KB)
downloaded 323 KB
package TailRank successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\stator-guest\AppData\Local\Temp\RtmpoVx40V\downloaded_packages
> library(TailRank)
Error: package or namespace load failed for TailRank in loadNamespace(i,
c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
there is no package called Biobase
In addition: Warning message:
package TailRank was built under R version 3.4.2
[[alternative HTML version deleted]]
__________________________________________________________________________________________________________
This email has been scanned for the NSW Ministry of Health by the Websense
Hosted Email Security System.
Emails and attachments are monitored to ensure compliance with the NSW Ministry
of health's Electronic Messaging Policy.
__________________________________________________________________________________________________________
_______________________________________________________________________________________________________
Disclaimer: This message is intended for the addressee named and may contain
confidential information.
If you are not the intended recipient, please delete it and notify the sender.
Views expressed in this message are those of the individual sender, and are not
necessarily the views of the NSW Ministry of Health.
_______________________________________________________________________________________________________
This email has been scanned for the NSW Ministry of Health by the Websense
Hosted Email Security System.
Emails and attachments are monitored to ensure compliance with the NSW Ministry
of Health's Electronic Messaging Policy.
_______________________________________________________________________________________________________
______________________________________________
R-help at r-project.org<mailto:R-help at r-project.org> mailing list -- To
UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
[[alternative HTML version deleted]]
Hi Amany,
I had no trouble installing TailRank and bioconductor using the link Rhydwyn
provided.
I was curious about your statement that TailRank uses a different
parameterization for the betabinomial distribution than rmutil.
I looked at the documentation for the two packages and the transformation
to go from one to the other is straightforward.
If you want, you can do the following.
Let (N,u,v) be the parameters used in TailRank and (N,m,s) the parameters
used in rmutil. The correspondence is:
N = N, m = u/(u+v), s = u+v.
This means you can define functions such as:
mypbb <- function(x,N,u,v) { rmutil::pbetabinom(x,N,u/(u+v),u+v) } # CDF
myqbb <- function(x,N,u,v) { rmutil:qbetabinom{x,N,u/(u+v),u+v) } #
inverse CDF
HTH,
Eric
On Wed, Nov 1, 2017 at 6:09 PM, Amany Abdel-Karim <ABDELKARIM2 at msn.com>
wrote:
> Hello,
>
> Thank you for your response. I need to install RankTail package since it
> contains the beta binomial distribution, CDF and inverse CDF in the usual
> form which I need to use. However rmutil package contain unusual forms for
> these functions. So it is easier for me to deal with the forms are
> contained in RankTail.
>
> I tried to install bioconductor package, using the following commands
> but I still got the following errors:
>
>
> (1) I tried biocLite() and then library ("TailRank"), I got the
following
> errors.
>
> > biocLite()Error in biocLite() : could not find function
"biocLite"> library("TailRank")Loading required package:
oompaBaseError: package or namespace load failed for ?TailRank? in
loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
> there is no package called ?Biobase?In addition: Warning messages:1:
package ?TailRank? was built under R version 3.4.2 2: package ?oompaBase? was
built under R version 3.4.2
>
>
> (2) I tried to write the command biocLite(), then
biocLite("TailRank"), I got the following errors:
>
> > biocLite()Error in biocLite() : could not find function
"biocLite"> biocLite("ilRank")Error in
biocLite("ilRank") : could not find function "biocLite">
biocLite()Error in biocLite() : could not find function "biocLite">
biocLite("TailRank")Error in biocLite("TailRank") : could
not find function "biocLite"
>
> >
>
>
> Also, I checked under packages on the right side of the R window and I
> found TailRank , Description is Tail-Rank statistic, and version is 3.1.3.
> So, I tried to write the following code in the console window to check if
> the package works:
>
> > N<-20> u<-3> v<-10> p<-u/u+v> x<-0:N
>
> > yy<-dbb(x,N,u,v)
>
>
> I got the following error:Error in dbb(x, N, u, v) : could not find
function "dbb"
>
> >
>
> I am confused because if the package TailRank is already there, why the
> pervious code does not work to calculate dbb (x,N,u,v) and I got error? If
> I do not have the package, would you please let me know the right commands
> I should write in the script window to install TaiRank because the commands
> I used (which I mentioned at the beginning of the email did not work and
> gave errors). I appreciate your help since I am a new user of R.
>
>
> Amany
>
>
>
> ------------------------------
>
> *From:* Eric Berger <ericjberger at gmail.com>
> *Sent:* Wednesday, November 1, 2017 2:42 AM
> *To:* MCGUIRE, Rhydwyn
> *Cc:* Amany Abdel-Karim; R-help at stat.math.ethz.ch
> *Subject:* Re: [R] beta binomial distribution installation
>
> Hi,
> I did a quick search for other packages that provide the beta binomial
> distribution and found "rmutil".
>
> > install.packages("rmutil")
>
> The package has the CDF (pbetabinom) and inverse CDF (qbetabinom) among
> other functions.
>
> HTH,
> Eric
>
>
>
> On Wed, Nov 1, 2017 at 7:50 AM, MCGUIRE, Rhydwyn <
> rmcgu at doh.health.nsw.gov.au> wrote:
>
>> Hi there,
>>
>> It looks like you also need the bioconductor package biobase, I found
>> instructions for downloading that package here:
>> www.bioconductor.org/install
>>
>> Good luck.
>>
>> Cheers,
>> Rhydwyn
>>
>> -----Original Message-----
>> From: R-help [mailto:r-help-bounces at r-project.org] On Behalf Of
Amany
>> Abdel-Karim
>> Sent: Wednesday, 1 November 2017 2:13 PM
>> To: R-help at stat.math.ethz.ch
>> Subject: [R] beta binomial distribution installation
>>
>> Hello,
>>
>> I tried to install package TailRank using the command install.packages
>> (RankTail) and library (TailRank) but I got the following errors. So,
how
>> can I install TaiRank in Rstudio to have se beta-binomial distribution,
CDF
>> and inverse CDG of beta-binomal?
>>
>> The commands I used are:
>>
>> > install.packages("TailRank")
>>
>> Installing package into
C:/Users/stator-guest/Documents/R/win-library/3.4
>>
>> (as lib is unspecified)
>>
>> Warning in install.packages :
>>
>> dependency Biobase is not available
>>
>> trying URL
'https://cran.rstudio.com/bin/windows/contrib/3.4/TailRank_3
>> .1.3.zip'
>>
>> Content type 'application/zip' length 331270 bytes (323 KB)
>>
>> downloaded 323 KB
>>
>>
>>
>> package TailRank successfully unpacked and MD5 sums checked
>>
>>
>>
>> The downloaded binary packages are in
>>
>>
C:\Users\stator-guest\AppData\Local\Temp\RtmpoVx40V\download
>> ed_packages
>>
>> > library(TailRank)
>>
>> Error: package or namespace load failed for TailRank in
loadNamespace(i,
>> c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
>>
>> there is no package called Biobase
>>
>> In addition: Warning message:
>>
>> package TailRank was built under R version 3.4.2
>>
>>
>>
>>
>> [[alternative HTML version deleted]]
>>
>> ____________________________________________________________
>> ______________________________________________
>> This email has been scanned for the NSW Ministry of Health by the
>> Websense Hosted Email Security System.
>> Emails and attachments are monitored to ensure compliance with the NSW
>> Ministry of health's Electronic Messaging Policy.
>> ____________________________________________________________
>> ______________________________________________
>> ____________________________________________________________
>> ___________________________________________
>> Disclaimer: This message is intended for the addressee named and may
>> contain confidential information.
>> If you are not the intended recipient, please delete it and notify the
>> sender.
>> Views expressed in this message are those of the individual sender, and
>> are not necessarily the views of the NSW Ministry of Health.
>> ____________________________________________________________
>> ___________________________________________
>> This email has been scanned for the NSW Ministry of Health by the
>> Websense Hosted Email Security System.
>> Emails and attachments are monitored to ensure compliance with the NSW
>> Ministry of Health's Electronic Messaging Policy.
>> ____________________________________________________________
>> ___________________________________________
>> ______________________________________________
>> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
>> https://stat.ethz.ch/mailman/listinfo/r-help
>> PLEASE do read the posting guide http://www.R-project.org/posti
>> ng-guide.html
>> and provide commented, minimal, self-contained, reproducible code.
>>
>
>
[[alternative HTML version deleted]]
> On Nov 1, 2017, at 9:09 AM, Amany Abdel-Karim <ABDELKARIM2 at msn.com> wrote: > > Hello, > > Thank you for your response. I need to install RankTail package since it contains the beta binomial distribution, CDF and inverse CDF in the usual form which I need to use. However rmutil package contain unusual forms for these functions. So it is easier for me to deal with the forms are contained in RankTail. > > I tried to install bioconductor package, using the following commands but I still got the following errors: > > > (1) I tried biocLite() and then library ("TailRank"), I got the following errors.It appears you failed to follow the full instructions which were to execute: source("https://bioconductor.org/biocLite.R") biocLite() The first line creates the biocLite function within your workspace. -- David.> >> biocLite() > Error in biocLite() : could not find function "biocLite" >> library("TailRank") > Loading required package: oompaBase > Error: package or namespace load failed for ?TailRank? in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): > there is no package called ?Biobase? > In addition: Warning messages: > 1: package ?TailRank? was built under R version 3.4.2 > 2: package ?oompaBase? was built under R version 3.4.2 > > > > (2) I tried to write the command biocLite(), then biocLite("TailRank"), I got the following errors: > >> biocLite() > Error in biocLite() : could not find function "biocLite" >> biocLite("ilRank") > Error in biocLite("ilRank") : could not find function "biocLite" >> biocLite() > Error in biocLite() : could not find function "biocLite" >> biocLite("TailRank") > Error in biocLite("TailRank") : could not find function "biocLite" > > > > >> > > > > > Also, I checked under packages on the right side of the R window and I found TailRank , Description is Tail-Rank statistic, and version is 3.1.3. So, I tried to write the following code in the console window to check if the package works: > >> N<-20 >> u<-3 >> v<-10 >> p<-u/u+v >> x<-0:N > >> yy<-dbb(x,N,u,v) > > > I got the following error: > Error in dbb(x, N, u, v) : could not find function "dbb" > > > > >> > > > > I am confused because if the package TailRank is already there, why the pervious code does not work to calculate dbb (x,N,u,v) and I got error? If I do not have the package, would you please let me know the right commands I should write in the script window to install TaiRank because the commands I used (which I mentioned at the beginning of the email did not work and gave errors). I appreciate your help since I am a new user of R. > > > Amany > > > > ________________________________ > > From: Eric Berger <ericjberger at gmail.com> > Sent: Wednesday, November 1, 2017 2:42 AM > To: MCGUIRE, Rhydwyn > Cc: Amany Abdel-Karim; R-help at stat.math.ethz.ch > Subject: Re: [R] beta binomial distribution installation > > Hi, > I did a quick search for other packages that provide the beta binomial distribution and found "rmutil". > >> install.packages("rmutil") > > The package has the CDF (pbetabinom) and inverse CDF (qbetabinom) among other functions. > > HTH, > Eric > > > > On Wed, Nov 1, 2017 at 7:50 AM, MCGUIRE, Rhydwyn <rmcgu at doh.health.nsw.gov.au<mailto:rmcgu at doh.health.nsw.gov.au>> wrote: > Hi there, > > It looks like you also need the bioconductor package biobase, I found instructions for downloading that package here: www.bioconductor.org/install<http://www.bioconductor.org/install> > > Good luck. > > Cheers, > Rhydwyn > > -----Original Message----- > From: R-help [mailto:r-help-bounces at r-project.org<mailto:r-help-bounces at r-project.org>] On Behalf Of Amany Abdel-Karim > Sent: Wednesday, 1 November 2017 2:13 PM > To: R-help at stat.math.ethz.ch<mailto:R-help at stat.math.ethz.ch> > Subject: [R] beta binomial distribution installation > > Hello, > > I tried to install package TailRank using the command install.packages (RankTail) and library (TailRank) but I got the following errors. So, how can I install TaiRank in Rstudio to have se beta-binomial distribution, CDF and inverse CDG of beta-binomal? > > The commands I used are: > >> install.packages("TailRank") > > Installing package into C:/Users/stator-guest/Documents/R/win-library/3.4 > > (as lib is unspecified) > > Warning in install.packages : > > dependency Biobase is not available > > trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.4/TailRank_3.1.3.zip' > > Content type 'application/zip' length 331270 bytes (323 KB) > > downloaded 323 KB > > > > package TailRank successfully unpacked and MD5 sums checked > > > > The downloaded binary packages are in > > C:\Users\stator-guest\AppData\Local\Temp\RtmpoVx40V\downloaded_packages > >> library(TailRank) > > Error: package or namespace load failed for TailRank in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): > > there is no package called Biobase > > In addition: Warning message: > > package TailRank was built under R version 3.4.2 > > > > > [[alternative HTML version deleted]] > > __________________________________________________________________________________________________________ > This email has been scanned for the NSW Ministry of Health by the Websense Hosted Email Security System. > Emails and attachments are monitored to ensure compliance with the NSW Ministry of health's Electronic Messaging Policy. > __________________________________________________________________________________________________________ > _______________________________________________________________________________________________________ > Disclaimer: This message is intended for the addressee named and may contain confidential information. > If you are not the intended recipient, please delete it and notify the sender. > Views expressed in this message are those of the individual sender, and are not necessarily the views of the NSW Ministry of Health. > _______________________________________________________________________________________________________ > This email has been scanned for the NSW Ministry of Health by the Websense Hosted Email Security System. > Emails and attachments are monitored to ensure compliance with the NSW Ministry of Health's Electronic Messaging Policy. > _______________________________________________________________________________________________________ > ______________________________________________ > R-help at r-project.org<mailto:R-help at r-project.org> mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. > > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code.David Winsemius Alameda, CA, USA 'Any technology distinguishable from magic is insufficiently advanced.' -Gehm's Corollary to Clarke's Third Law