Hi,
Thanks for the quick answer. I looked into the link that you provided. But
I am still not able to implement a solution. Here is my attempt :
library(ggplot2)
x<-1:10
y<-x^2
df<-data.frame(x=x,y=y)
p1<-ggplot(df,aes(x,y))+geom_point()+
scale_x_log10(
breaks = scales::trans_breaks("log10", function(x) 10^x),
labels = scales::trans_format("log10", scales::math_format(10^.x))
) +
scale_y_log10(
breaks = scales::trans_breaks("log10", function(x) 10^x),
labels = scales::trans_format("log10", scales::math_format(10^.x))
) +theme_bw()
p2<-p1 + annotation_logticks()
p2
p2 + scale_y_continuous(sec.axis = sec_axis(~.))
I get the following error :
Scale for 'y' is already present. Adding another scale for 'y',
which will
replace the existing scale.
My questions :
1. How do I change the breaks and labels to correspond to those in my
earlier plot with R graphics? I don't want the 10^x format.
2. When I try with the annotation_logticks('trbl') option in the above
code, I get the error :
Error in base - 1 : non-numeric argument to binary operator
3. I don't see how I can use the secondary axis option. I can see how I can
multiply the y-variable (or x) by a constant ( e.g. by sec_axis(~.*10)).
But I don't see how I can use it with a function. For example, with log or
exp.
4. How can I create extra space in the margins with ggplot? Would the par()
command work here as well?
Would appreciate continued help.
Thanks
2017-08-11 11:49 GMT+02:00 PIKAL Petr <petr.pikal at precheza.cz>:
> Hi
>
> see in line
> > -----Original Message-----
> > From: R-help [mailto:r-help-bounces at r-project.org] On Behalf Of
Vivek
> > Sutradhara
> > Sent: Friday, August 11, 2017 11:02 AM
> > To: r-help <r-help at r-project.org>
> > Subject: [R] Annotation Ticks on the axis
> >
> > Hi all,
> >
> > I would like to have help in getting annotation ticks (corresponding
to
> the
> > minor grid) on my plot. Here is my toy example :
> >
> >
> > par(mar=c(5, 6, 5, 5) + 0.1)
> >
> > x<-1:10
> >
> > y<-x^2
> >
> >
plot(x,y,log="xy",xlab="log(x)",ylab="log(y)")
> >
> > par(new=T)
> >
> >
plot(log(x),log(y),type='n',col="red",xaxt="n",yaxt="n",xlab="",ylab="")
> >
> > axis(side=3,tick=TRUE,at=pretty(range(log(x))))
> >
> > mtext("log(x) with log labels",side=3,line=3)
> >
> > axis(side=4,tick=TRUE,at=pretty(range(log(y))))
> >
> > mtext("log(y) with log labels",side=4,line=3)
> >
> > par()
> >
> >
> > I have the following questions :
> >
> > 1. I get a long output after the final par command. How can I make
this
> output
> > silent?
>
> pp<-par()
>
> >
> > 2. I would like to get ticks corresponding to the command
> annotation_logticks
> > in ggplot2. Actually, it would be easiest for me to work directly with
> ggplot. But
> > I am not able to implement the secondary axis option with ggplot.
Would
> > appreciate help with that, if it is easier.
>
> http://ggplot2.tidyverse.org/reference/sec_axis.html
>
> Cheers
> Petr
>
> >
> > Thanks,
> >
> > Vivek
> >
> > [[alternative HTML version deleted]]
> >
> > ______________________________________________
> > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> > https://stat.ethz.ch/mailman/listinfo/r-help
> > PLEASE do read the posting guide http://www.R-project.org/
> posting-guide.html
> > and provide commented, minimal, self-contained, reproducible code.
>
> ________________________________
> Tento e-mail a jak?koliv k n?mu p?ipojen? dokumenty jsou d?v?rn? a jsou
> ur?eny pouze jeho adres?t?m.
> Jestli?e jste obdr?el(a) tento e-mail omylem, informujte laskav?
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> Odes?latel tohoto e-mailu (nab?dky) vylu?uje p?ijet? nab?dky ze strany
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> - trv? odes?latel na tom, ?e p??slu?n? smlouva je uzav?ena teprve
> v?slovn?m dosa?en?m shody na v?ech jej?ch n?le?itostech.
> - odes?latel tohoto emailu informuje, ?e nen? opr?vn?n uzav?rat za
> spole?nost ??dn? smlouvy s v?jimkou p??pad?, kdy k tomu byl p?semn? zmocn?n
> nebo p?semn? pov??en a takov? pov??en? nebo pln? moc byly adres?tovi tohoto
> emailu p??padn? osob?, kterou adres?t zastupuje, p?edlo?eny nebo jejich
> existence je adres?tovi ?i osob? j?m zastoupen? zn?m?.
>
> This e-mail and any documents attached to it may be confidential and are
> intended only for its intended recipients.
> If you received this e-mail by mistake, please immediately inform its
> sender. Delete the contents of this e-mail with all attachments and its
> copies from your system.
> If you are not the intended recipient of this e-mail, you are not
> authorized to use, disseminate, copy or disclose this e-mail in any manner.
> The sender of this e-mail shall not be liable for any possible damage
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>
> In case that this e-mail forms part of business dealings:
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> known to the recipient of the person represented by the recipient.
>
[[alternative HTML version deleted]]
> On Aug 11, 2017, at 3:23 AM, Vivek Sutradhara <viveksutra at gmail.com> wrote: > > Hi, > Thanks for the quick answer. I looked into the link that you provided. But > I am still not able to implement a solution. Here is my attempt : > > library(ggplot2) > x<-1:10 > y<-x^2 > df<-data.frame(x=x,y=y) > p1<-ggplot(df,aes(x,y))+geom_point()+ > scale_x_log10( > breaks = scales::trans_breaks("log10", function(x) 10^x), > labels = scales::trans_format("log10", scales::math_format(10^.x)) > ) + > scale_y_log10( > breaks = scales::trans_breaks("log10", function(x) 10^x), > labels = scales::trans_format("log10", scales::math_format(10^.x)) > ) +theme_bw() > p2<-p1 + annotation_logticks() > p2 > > > p2 + scale_y_continuous(sec.axis = sec_axis(~.)) > I get the following error : > Scale for 'y' is already present. Adding another scale for 'y', which will > replace the existing scale. >StackOverflow question with extensive commentary: Plot with 2 y axes, one y axis on the left, and another y axis on the right https://stackoverflow.com/questions/3099219/plot-with-2-y-axes-one-y-axis-on-the-left-and-another-y-axis-on-the-right David.> My questions : > 1. How do I change the breaks and labels to correspond to those in my > earlier plot with R graphics? I don't want the 10^x format. > 2. When I try with the annotation_logticks('trbl') option in the above > code, I get the error : > Error in base - 1 : non-numeric argument to binary operator > 3. I don't see how I can use the secondary axis option. I can see how I can > multiply the y-variable (or x) by a constant ( e.g. by sec_axis(~.*10)). > But I don't see how I can use it with a function. For example, with log or > exp. > 4. How can I create extra space in the margins with ggplot? Would the par() > command work here as well? > > Would appreciate continued help. > Thanks > > 2017-08-11 11:49 GMT+02:00 PIKAL Petr <petr.pikal at precheza.cz>: > >> Hi >> >> see in line >>> -----Original Message----- >>> From: R-help [mailto:r-help-bounces at r-project.org] On Behalf Of Vivek >>> Sutradhara >>> Sent: Friday, August 11, 2017 11:02 AM >>> To: r-help <r-help at r-project.org> >>> Subject: [R] Annotation Ticks on the axis >>> >>> Hi all, >>> >>> I would like to have help in getting annotation ticks (corresponding to >> the >>> minor grid) on my plot. Here is my toy example : >>> >>> >>> par(mar=c(5, 6, 5, 5) + 0.1) >>> >>> x<-1:10 >>> >>> y<-x^2 >>> >>> plot(x,y,log="xy",xlab="log(x)",ylab="log(y)") >>> >>> par(new=T) >>> >>> plot(log(x),log(y),type='n',col="red",xaxt="n",yaxt="n",xlab="",ylab="") >>> >>> axis(side=3,tick=TRUE,at=pretty(range(log(x)))) >>> >>> mtext("log(x) with log labels",side=3,line=3) >>> >>> axis(side=4,tick=TRUE,at=pretty(range(log(y)))) >>> >>> mtext("log(y) with log labels",side=4,line=3) >>> >>> par() >>> >>> >>> I have the following questions : >>> >>> 1. I get a long output after the final par command. How can I make this >> output >>> silent? >> >> pp<-par() >> >>> >>> 2. I would like to get ticks corresponding to the command >> annotation_logticks >>> in ggplot2. Actually, it would be easiest for me to work directly with >> ggplot. But >>> I am not able to implement the secondary axis option with ggplot. Would >>> appreciate help with that, if it is easier. >> >> http://ggplot2.tidyverse.org/reference/sec_axis.html >> >> Cheers >> Petr >> >>> >>> Thanks, >>> >>> Vivek >>> >>> [[alternative HTML version deleted]] >>> >>> ______________________________________________ >>> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see >>> https://stat.ethz.ch/mailman/listinfo/r-help >>> PLEASE do read the posting guide http://www.R-project.org/ >> posting-guide.html >>> and provide commented, minimal, self-contained, reproducible code. >> >> ________________________________ >> Tento e-mail a jak?koliv k n?mu p?ipojen? dokumenty jsou d?v?rn? a jsou >> ur?eny pouze jeho adres?t?m. >> Jestli?e jste obdr?el(a) tento e-mail omylem, informujte laskav? >> neprodlen? jeho odes?latele. Obsah tohoto emailu i s p??lohami a jeho kopie >> vyma?te ze sv?ho syst?mu. >> Nejste-li zam??len?m adres?tem tohoto emailu, nejste opr?vn?ni tento email >> jakkoliv u??vat, roz?i?ovat, kop?rovat ?i zve?ej?ovat. >> Odes?latel e-mailu neodpov?d? za eventu?ln? ?kodu zp?sobenou modifikacemi >> ?i zpo?d?n?m p?enosu e-mailu. >> >> V p??pad?, ?e je tento e-mail sou??st? obchodn?ho jedn?n?: >> - vyhrazuje si odes?latel pr?vo ukon?it kdykoliv jedn?n? o uzav?en? >> smlouvy, a to z jak?hokoliv d?vodu i bez uveden? d?vodu. >> - a obsahuje-li nab?dku, je adres?t opr?vn?n nab?dku bezodkladn? p?ijmout; >> Odes?latel tohoto e-mailu (nab?dky) vylu?uje p?ijet? nab?dky ze strany >> p??jemce s dodatkem ?i odchylkou. >> - trv? odes?latel na tom, ?e p??slu?n? smlouva je uzav?ena teprve >> v?slovn?m dosa?en?m shody na v?ech jej?ch n?le?itostech. >> - odes?latel tohoto emailu informuje, ?e nen? opr?vn?n uzav?rat za >> spole?nost ??dn? smlouvy s v?jimkou p??pad?, kdy k tomu byl p?semn? zmocn?n >> nebo p?semn? pov??en a takov? pov??en? nebo pln? moc byly adres?tovi tohoto >> emailu p??padn? osob?, kterou adres?t zastupuje, p?edlo?eny nebo jejich >> existence je adres?tovi ?i osob? j?m zastoupen? zn?m?. >> >> This e-mail and any documents attached to it may be confidential and are >> intended only for its intended recipients. >> If you received this e-mail by mistake, please immediately inform its >> sender. Delete the contents of this e-mail with all attachments and its >> copies from your system. >> If you are not the intended recipient of this e-mail, you are not >> authorized to use, disseminate, copy or disclose this e-mail in any manner. >> The sender of this e-mail shall not be liable for any possible damage >> caused by modifications of the e-mail or by delay with transfer of the >> email. >> >> In case that this e-mail forms part of business dealings: >> - the sender reserves the right to end negotiations about entering into a >> contract in any time, for any reason, and without stating any reasoning. >> - if the e-mail contains an offer, the recipient is entitled to >> immediately accept such offer; The sender of this e-mail (offer) excludes >> any acceptance of the offer on the part of the recipient containing any >> amendment or variation. >> - the sender insists on that the respective contract is concluded only >> upon an express mutual agreement on all its aspects. >> - the sender of this e-mail informs that he/she is not authorized to enter >> into any contracts on behalf of the company except for cases in which >> he/she is expressly authorized to do so in writing, and such authorization >> or power of attorney is submitted to the recipient or the person >> represented by the recipient, or the existence of such authorization is >> known to the recipient of the person represented by the recipient. >> > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code.David Winsemius Alameda, CA, USA 'Any technology distinguishable from magic is insufficiently advanced.' -Gehm's Corollary to Clarke's Third Law
Hi
Yes that is exactly from where I found sec_axis example.
ggplot(mpg, aes(displ, hwy)) +
geom_point() +
scale_y_continuous(
"mpg (US)",
sec.axis = sec_axis(~ . * 1.20, name = "mpg (UK)")
)
which works if used as intended
p1<-ggplot(df,aes(x,y))+geom_point()+
scale_x_log10(
breaks = scales::trans_breaks("log10", function(x) 10^x),
labels = scales::trans_format("log10", scales::math_format(10^.x))
) +
scale_y_log10(
breaks = scales::trans_breaks("log10", function(x) 10^x),
labels = scales::trans_format("log10",
scales::math_format(10^.x)),
sec.axis = sec_axis(~./500)
) +theme_bw()
p2<-p1 + annotation_logticks()
p2
Cheers
Petr
> -----Original Message-----
> From: David Winsemius [mailto:dwinsemius at comcast.net]
> Sent: Friday, August 11, 2017 7:46 PM
> To: Vivek Sutradhara <viveksutra at gmail.com>
> Cc: PIKAL Petr <petr.pikal at precheza.cz>; r-help <r-help at
r-project.org>
> Subject: Re: [R] Annotation Ticks on the axis
>
>
> > On Aug 11, 2017, at 3:23 AM, Vivek Sutradhara <viveksutra at
gmail.com>
> wrote:
> >
> > Hi,
> > Thanks for the quick answer. I looked into the link that you provided.
> > But I am still not able to implement a solution. Here is my attempt :
> >
> > library(ggplot2)
> > x<-1:10
> > y<-x^2
> > df<-data.frame(x=x,y=y)
> > p1<-ggplot(df,aes(x,y))+geom_point()+
> > scale_x_log10(
> > breaks = scales::trans_breaks("log10", function(x) 10^x),
> > labels = scales::trans_format("log10",
scales::math_format(10^.x))
> > ) +
> > scale_y_log10(
> > breaks = scales::trans_breaks("log10", function(x) 10^x),
> > labels = scales::trans_format("log10",
scales::math_format(10^.x))
> > ) +theme_bw()
> > p2<-p1 + annotation_logticks()
> > p2
> >
> >
> > p2 + scale_y_continuous(sec.axis = sec_axis(~.)) I get the following
> > error :
> > Scale for 'y' is already present. Adding another scale for
'y', which
> > will replace the existing scale.
> >
> StackOverflow question with extensive commentary:
>
> Plot with 2 y axes, one y axis on the left, and another y axis on the right
> https://stackoverflow.com/questions/3099219/plot-with-2-y-axes-one-y-axis-
> on-the-left-and-another-y-axis-on-the-right
>
> David.
>
> > My questions :
> > 1. How do I change the breaks and labels to correspond to those in my
> > earlier plot with R graphics? I don't want the 10^x format.
> > 2. When I try with the annotation_logticks('trbl') option in
the above
> > code, I get the error :
> > Error in base - 1 : non-numeric argument to binary operator 3. I
don't
> > see how I can use the secondary axis option. I can see how I can
> > multiply the y-variable (or x) by a constant ( e.g. by
sec_axis(~.*10)).
> > But I don't see how I can use it with a function. For example,
with
> > log or exp.
> > 4. How can I create extra space in the margins with ggplot? Would the
> > par() command work here as well?
> >
> > Would appreciate continued help.
> > Thanks
> >
> > 2017-08-11 11:49 GMT+02:00 PIKAL Petr <petr.pikal at
precheza.cz>:
> >
> >> Hi
> >>
> >> see in line
> >>> -----Original Message-----
> >>> From: R-help [mailto:r-help-bounces at r-project.org] On
Behalf Of
> >>> Vivek Sutradhara
> >>> Sent: Friday, August 11, 2017 11:02 AM
> >>> To: r-help <r-help at r-project.org>
> >>> Subject: [R] Annotation Ticks on the axis
> >>>
> >>> Hi all,
> >>>
> >>> I would like to have help in getting annotation ticks
(corresponding
> >>> to
> >> the
> >>> minor grid) on my plot. Here is my toy example :
> >>>
> >>>
> >>> par(mar=c(5, 6, 5, 5) + 0.1)
> >>>
> >>> x<-1:10
> >>>
> >>> y<-x^2
> >>>
> >>>
plot(x,y,log="xy",xlab="log(x)",ylab="log(y)")
> >>>
> >>> par(new=T)
> >>>
> >>>
plot(log(x),log(y),type='n',col="red",xaxt="n",yaxt="n",xlab="",ylab
> >>> ="")
> >>>
> >>> axis(side=3,tick=TRUE,at=pretty(range(log(x))))
> >>>
> >>> mtext("log(x) with log labels",side=3,line=3)
> >>>
> >>> axis(side=4,tick=TRUE,at=pretty(range(log(y))))
> >>>
> >>> mtext("log(y) with log labels",side=4,line=3)
> >>>
> >>> par()
> >>>
> >>>
> >>> I have the following questions :
> >>>
> >>> 1. I get a long output after the final par command. How can I
make
> >>> this
> >> output
> >>> silent?
> >>
> >> pp<-par()
> >>
> >>>
> >>> 2. I would like to get ticks corresponding to the command
> >> annotation_logticks
> >>> in ggplot2. Actually, it would be easiest for me to work
directly
> >>> with
> >> ggplot. But
> >>> I am not able to implement the secondary axis option with
ggplot.
> >>> Would appreciate help with that, if it is easier.
> >>
> >> http://ggplot2.tidyverse.org/reference/sec_axis.html
> >>
> >> Cheers
> >> Petr
> >>
> >>>
> >>> Thanks,
> >>>
> >>> Vivek
> >>>
> >>> [[alternative HTML version deleted]]
> >>>
> >>> ______________________________________________
> >>> R-help at r-project.org mailing list -- To UNSUBSCRIBE and
more, see
> >>> https://stat.ethz.ch/mailman/listinfo/r-help
> >>> PLEASE do read the posting guide http://www.R-project.org/
> >> posting-guide.html
> >>> and provide commented, minimal, self-contained, reproducible
code.
> >>
> >> ________________________________
> >> Tento e-mail a jak?koliv k n?mu p?ipojen? dokumenty jsou d?v?rn? a
> >> jsou ur?eny pouze jeho adres?t?m.
> >> Jestli?e jste obdr?el(a) tento e-mail omylem, informujte laskav?
> >> neprodlen? jeho odes?latele. Obsah tohoto emailu i s p??lohami a
jeho
> >> kopie vyma?te ze sv?ho syst?mu.
> >> Nejste-li zam??len?m adres?tem tohoto emailu, nejste opr?vn?ni
tento
> >> email jakkoliv u??vat, roz?i?ovat, kop?rovat ?i zve?ej?ovat.
> >> Odes?latel e-mailu neodpov?d? za eventu?ln? ?kodu zp?sobenou
> >> modifikacemi ?i zpo?d?n?m p?enosu e-mailu.
> >>
> >> V p??pad?, ?e je tento e-mail sou??st? obchodn?ho jedn?n?:
> >> - vyhrazuje si odes?latel pr?vo ukon?it kdykoliv jedn?n? o
uzav?en?
> >> smlouvy, a to z jak?hokoliv d?vodu i bez uveden? d?vodu.
> >> - a obsahuje-li nab?dku, je adres?t opr?vn?n nab?dku bezodkladn?
> >> p?ijmout; Odes?latel tohoto e-mailu (nab?dky) vylu?uje p?ijet?
> >> nab?dky ze strany p??jemce s dodatkem ?i odchylkou.
> >> - trv? odes?latel na tom, ?e p??slu?n? smlouva je uzav?ena teprve
> >> v?slovn?m dosa?en?m shody na v?ech jej?ch n?le?itostech.
> >> - odes?latel tohoto emailu informuje, ?e nen? opr?vn?n uzav?rat za
> >> spole?nost ??dn? smlouvy s v?jimkou p??pad?, kdy k tomu byl
p?semn?
> >> zmocn?n nebo p?semn? pov??en a takov? pov??en? nebo pln? moc byly
> >> adres?tovi tohoto emailu p??padn? osob?, kterou adres?t zastupuje,
> >> p?edlo?eny nebo jejich existence je adres?tovi ?i osob? j?m
zastoupen?
> zn?m?.
> >>
> >> This e-mail and any documents attached to it may be confidential
and
> >> are intended only for its intended recipients.
> >> If you received this e-mail by mistake, please immediately inform
its
> >> sender. Delete the contents of this e-mail with all attachments
and
> >> its copies from your system.
> >> If you are not the intended recipient of this e-mail, you are not
> >> authorized to use, disseminate, copy or disclose this e-mail in
any manner.
> >> The sender of this e-mail shall not be liable for any possible
damage
> >> caused by modifications of the e-mail or by delay with transfer of
> >> the email.
> >>
> >> In case that this e-mail forms part of business dealings:
> >> - the sender reserves the right to end negotiations about entering
> >> into a contract in any time, for any reason, and without stating
any
> reasoning.
> >> - if the e-mail contains an offer, the recipient is entitled to
> >> immediately accept such offer; The sender of this e-mail (offer)
> >> excludes any acceptance of the offer on the part of the recipient
> >> containing any amendment or variation.
> >> - the sender insists on that the respective contract is concluded
> >> only upon an express mutual agreement on all its aspects.
> >> - the sender of this e-mail informs that he/she is not authorized
to
> >> enter into any contracts on behalf of the company except for cases
in
> >> which he/she is expressly authorized to do so in writing, and such
> >> authorization or power of attorney is submitted to the recipient
or
> >> the person represented by the recipient, or the existence of such
> >> authorization is known to the recipient of the person represented
by the
> recipient.
> >>
> >
> > [[alternative HTML version deleted]]
> >
> > ______________________________________________
> > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
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>
> David Winsemius
> Alameda, CA, USA
>
> 'Any technology distinguishable from magic is insufficiently
advanced.' -
> Gehm's Corollary to Clarke's Third Law
>
>
>
>
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